RNA–Protein interactions for RNA: ENST00000415950.4

SCN1B-202, Transcript of sodium voltage-gated channel beta subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SCN1B, Length 4,537 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1B-202ENST00000415950 DCAF8L2P0C7V8 631 aa22.02■■□□□ 1.12
SCN1B-202ENST00000415950 NISCHQ9Y2I1 1504 aa21.86■■□□□ 1.09
SCN1B-202ENST00000415950 SUPT5HO00267 1087 aaKnown RBP21.81■■□□□ 1.08
SCN1B-202ENST00000415950 SHROOM4Q9ULL8 1493 aa21.5■■□□□ 1.03
SCN1B-202ENST00000415950 EHMT2Q96KQ7 1210 aa21.12■□□□□ 0.97
SCN1B-202ENST00000415950 PCGF6Q9BYE7 350 aa20.98■□□□□ 0.95
SCN1B-202ENST00000415950 FAM9AQ8IZU1 332 aaPredicted RBP20.55■□□□□ 0.88
SCN1B-202ENST00000415950 TTBK1Q5TCY1 1321 aaPredicted RBP20.42■□□□□ 0.86
SCN1B-202ENST00000415950 PPARGC1BQ86YN6 1023 aaKnown RBP20.29■□□□□ 0.84
SCN1B-202ENST00000415950 PELP1Q8IZL8 1130 aaKnown RBP20.22■□□□□ 0.83
SCN1B-202ENST00000415950 HRCP23327 699 aa20.2■□□□□ 0.82
SCN1B-202ENST00000415950 LOC105371045A0A1W2PR82 267 aa20.07■□□□□ 0.8
SCN1B-202ENST00000415950 CCER1Q8TC90 406 aaPredicted RBP19.92■□□□□ 0.78
SCN1B-202ENST00000415950 CHIC1Q5VXU3 224 aa19.9■□□□□ 0.78
SCN1B-202ENST00000415950 TRIM41Q8WV44 630 aa19.88■□□□□ 0.77
SCN1B-202ENST00000415950 APLP2Q06481 763 aa19.88■□□□□ 0.77
SCN1B-202ENST00000415950 YTHDC1Q96MU7 727 aaKnown RBP19.85■□□□□ 0.77
SCN1B-202ENST00000415950 RANGAP1P46060 587 aaPredicted RBP19.8■□□□□ 0.76
SCN1B-202ENST00000415950 ZEB1P37275 1124 aaPredicted RBP19.77■□□□□ 0.76
SCN1B-202ENST00000415950 CENPBP07199 599 aaPredicted RBP19.75■□□□□ 0.75
SCN1B-202ENST00000415950 TRIM26Q12899 539 aaPredicted RBP19.74■□□□□ 0.75
SCN1B-202ENST00000415950 ERICH6Q7L0X2 663 aa19.6■□□□□ 0.73
SCN1B-202ENST00000415950 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.46■□□□□ 0.71
SCN1B-202ENST00000415950 UBTFP17480 764 aaKnown RBP19.44■□□□□ 0.7
SCN1B-202ENST00000415950 ATP1B4Q9UN42 357 aaPredicted RBP19.28■□□□□ 0.68
SCN1B-202ENST00000415950 NEFLP07196 543 aa19.22■□□□□ 0.67
SCN1B-202ENST00000415950 HNRNPUL2Q1KMD3 747 aaKnown RBP19.22■□□□□ 0.67
SCN1B-202ENST00000415950 DIEXFQ68CQ4 756 aaKnown RBP19.2■□□□□ 0.66
SCN1B-202ENST00000415950 GTF3C3Q9Y5Q9 886 aa19.19■□□□□ 0.66
SCN1B-202ENST00000415950 MYT1Q01538 1121 aa19.13■□□□□ 0.65
SCN1B-202ENST00000415950 ITGAEP38570 1179 aa19.07■□□□□ 0.64
SCN1B-202ENST00000415950 ABCC9O60706 1549 aa18.91■□□□□ 0.62
SCN1B-202ENST00000415950 SCAF1Q9H7N4 1312 aaKnown RBP18.9■□□□□ 0.62
SCN1B-202ENST00000415950 ACIN1Q9UKV3 1341 aaKnown RBP18.89■□□□□ 0.61
SCN1B-202ENST00000415950 CNGB1Q14028 1251 aaPredicted RBP18.84■□□□□ 0.61
SCN1B-202ENST00000415950 BCANQ96GW7 911 aa18.83■□□□□ 0.61
SCN1B-202ENST00000415950 NEUROD1Q13562 356 aa18.82■□□□□ 0.6
SCN1B-202ENST00000415950 MYO15BQ96JP2 1530 aa18.81■□□□□ 0.6
SCN1B-202ENST00000415950 CCDC180Q9P1Z9 1646 aa18.79■□□□□ 0.6
SCN1B-202ENST00000415950 POLR3GLQ9BT43 218 aa18.77■□□□□ 0.59
SCN1B-202ENST00000415950 ZNF316A6NFI3 1004 aaPredicted RBP18.64■□□□□ 0.57
SCN1B-202ENST00000415950 DAXXQ9UER7 740 aaPredicted RBP18.62■□□□□ 0.57
SCN1B-202ENST00000415950 DCAF1Q9Y4B6 1507 aa18.47■□□□□ 0.55
SCN1B-202ENST00000415950 MIER1Q8N108 512 aa18.39■□□□□ 0.54
SCN1B-202ENST00000415950 RTL5Q5HYW3 569 aaPredicted RBP18.38■□□□□ 0.53
SCN1B-202ENST00000415950 FAM50AQ14320 339 aaKnown RBP18.36■□□□□ 0.53
SCN1B-202ENST00000415950 PABPN1Q86U42 306 aaKnown RBP eCLIP18.31■□□□□ 0.52
SCN1B-202ENST00000415950 MYT1LQ9UL68 1186 aa18.29■□□□□ 0.52
SCN1B-202ENST00000415950 CLSPNQ9HAW4 1339 aa18.28■□□□□ 0.52
SCN1B-202ENST00000415950 CSRNP3Q8WYN3 585 aa18.26■□□□□ 0.51
SCN1B-202ENST00000415950 FKBP8Q14318 412 aa18.24■□□□□ 0.51
SCN1B-202ENST00000415950 SLC4A1APQ9BWU0 796 aaKnown RBP18.18■□□□□ 0.5
SCN1B-202ENST00000415950 DDX10Q13206 875 aaKnown RBP18.16■□□□□ 0.5
SCN1B-202ENST00000415950 HIRIP3Q9BW71 556 aaPredicted RBP18.15■□□□□ 0.5
SCN1B-202ENST00000415950 TRIM52Q96A61 297 aa18.15■□□□□ 0.5
SCN1B-202ENST00000415950 ANP32CO43423 234 aa18.14■□□□□ 0.49
SCN1B-202ENST00000415950 ZCCHC6Q5VYS8 1495 aaKnown RBP18.13■□□□□ 0.49
SCN1B-202ENST00000415950 P3H3Q8IVL6 736 aa18.13■□□□□ 0.49
SCN1B-202ENST00000415950 CDK11AQ9UQ88 783 aaPredicted RBP18.08■□□□□ 0.48
SCN1B-202ENST00000415950 RB1CC1Q8TDY2 1594 aa18.05■□□□□ 0.48
SCN1B-202ENST00000415950 IRX6P78412 446 aaPredicted RBP18.04■□□□□ 0.48
SCN1B-202ENST00000415950 ZNF326Q5BKZ1 582 aaKnown RBP18.03■□□□□ 0.48
SCN1B-202ENST00000415950 NACADO15069 1562 aa18■□□□□ 0.47
SCN1B-202ENST00000415950 ARID3CA6NKF2 412 aa17.96■□□□□ 0.47
SCN1B-202ENST00000415950 BCL11AQ9H165 835 aa17.96■□□□□ 0.47
SCN1B-202ENST00000415950 HNRNPUQ00839 825 aaKnown RBP eCLIP17.94■□□□□ 0.46
SCN1B-202ENST00000415950 SENP3-EIF4A1A0A087X0R7 540 aa17.91■□□□□ 0.46
SCN1B-202ENST00000415950 NPM2Q86SE8 214 aaKnown RBP17.89■□□□□ 0.45
SCN1B-202ENST00000415950 NBR1Q14596 966 aa17.86■□□□□ 0.45
SCN1B-202ENST00000415950 FAM9BQ8IZU0 186 aa17.86■□□□□ 0.45
SCN1B-202ENST00000415950 SCRIBQ14160 1630 aa17.85■□□□□ 0.45
SCN1B-202ENST00000415950 EIF5BO60841 1220 aaKnown RBP17.82■□□□□ 0.44
SCN1B-202ENST00000415950 SALL2Q9Y467 1007 aaPredicted RBP17.81■□□□□ 0.44
SCN1B-202ENST00000415950 RSF1Q96T23 1441 aaPredicted RBP17.8■□□□□ 0.44
SCN1B-202ENST00000415950 SUPT16HQ9Y5B9 1047 aaKnown RBP17.79■□□□□ 0.44
SCN1B-202ENST00000415950 ANP32EQ9BTT0 268 aa17.75■□□□□ 0.43
SCN1B-202ENST00000415950 CEP162Q5TB80 1403 aa17.74■□□□□ 0.43
SCN1B-202ENST00000415950 ANP32AP39687 249 aaKnown RBP17.73■□□□□ 0.43
SCN1B-202ENST00000415950 CHIC2Q9UKJ5 165 aa17.68■□□□□ 0.42
SCN1B-202ENST00000415950 CANXP27824 592 aaKnown RBP17.67■□□□□ 0.42
SCN1B-202ENST00000415950 TONSLQ96HA7 1378 aa17.66■□□□□ 0.42
SCN1B-202ENST00000415950 SIN3AQ96ST3 1273 aa17.66■□□□□ 0.42
SCN1B-202ENST00000415950 CLIP1P30622 1438 aa17.64■□□□□ 0.41
SCN1B-202ENST00000415950 ZBTB47Q9UFB7 747 aaPredicted RBP17.62■□□□□ 0.41
SCN1B-202ENST00000415950 MRS2Q9HD23 443 aa17.59■□□□□ 0.41
SCN1B-202ENST00000415950 CCDC136Q96JN2 1154 aa17.58■□□□□ 0.4
SCN1B-202ENST00000415950 SLC24A1O60721 1099 aa17.57■□□□□ 0.4
SCN1B-202ENST00000415950 KCNH8Q96L42 1107 aa17.55■□□□□ 0.4
SCN1B-202ENST00000415950 ZNF777Q9ULD5 760 aaPredicted RBP17.55■□□□□ 0.4
SCN1B-202ENST00000415950 ARXQ96QS3 562 aa17.52■□□□□ 0.4
SCN1B-202ENST00000415950 TSHZ2Q9NRE2 1034 aa17.52■□□□□ 0.4
SCN1B-202ENST00000415950 SOGA1O94964 1423 aa17.5■□□□□ 0.39
SCN1B-202ENST00000415950 FBLN2P98095 1184 aa17.49■□□□□ 0.39
SCN1B-202ENST00000415950 RBM19Q9Y4C8 960 aaKnown RBP17.49■□□□□ 0.39
SCN1B-202ENST00000415950 RTN4Q9NQC3 1192 aaKnown RBP17.48■□□□□ 0.39
SCN1B-202ENST00000415950 B4GALNT3Q6L9W6 998 aa17.46■□□□□ 0.39
SCN1B-202ENST00000415950 CECR2Q9BXF3 1484 aa17.46■□□□□ 0.39
SCN1B-202ENST00000415950 RRP7BPQ9NSQ0 103 aa17.46■□□□□ 0.39
SCN1B-202ENST00000415950 TNIKQ9UKE5 1360 aa17.45■□□□□ 0.38
SCN1B-202ENST00000415950 TMC1Q8TDI8 760 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms