Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 TBCB-211ENST00000589996 724 ntTSL 3 BASIC13.97□□□□□ -0.17
H3F3AP84243 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC13.97□□□□□ -0.17
H3F3AP84243 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
H3F3AP84243 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
H3F3AP84243 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC13.97□□□□□ -0.17
H3F3AP84243 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
H3F3AP84243 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC13.97□□□□□ -0.17
H3F3AP84243 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
H3F3AP84243 MFF-204ENST00000353339 2186 ntTSL 5 BASIC13.97□□□□□ -0.17
H3F3AP84243 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
H3F3AP84243 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
H3F3AP84243 TP73-209ENST00000603362 1668 ntTSL 5 BASIC13.97□□□□□ -0.17
H3F3AP84243 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
H3F3AP84243 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
H3F3AP84243 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
H3F3AP84243 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
H3F3AP84243 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
H3F3AP84243 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC13.97□□□□□ -0.17
H3F3AP84243 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
H3F3AP84243 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC13.97□□□□□ -0.17
H3F3AP84243 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
H3F3AP84243 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
H3F3AP84243 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
H3F3AP84243 TDG-209ENST00000544861 1387 ntTSL 2 BASIC13.96□□□□□ -0.17
H3F3AP84243 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
H3F3AP84243 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
H3F3AP84243 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
H3F3AP84243 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
H3F3AP84243 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC13.96□□□□□ -0.17
H3F3AP84243 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC13.96□□□□□ -0.17
H3F3AP84243 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC13.96□□□□□ -0.17
H3F3AP84243 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
H3F3AP84243 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
H3F3AP84243 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
H3F3AP84243 GSN-206ENST00000394353 2311 ntTSL 2 BASIC13.96□□□□□ -0.17
H3F3AP84243 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
H3F3AP84243 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC13.96□□□□□ -0.17
H3F3AP84243 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
H3F3AP84243 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
H3F3AP84243 RPL5P21-201ENST00000404620 815 ntBASIC13.96□□□□□ -0.17
H3F3AP84243 AC002472.2-201ENST00000442739 958 ntBASIC13.96□□□□□ -0.17
H3F3AP84243 GNAQP1-201ENST00000444815 1067 ntBASIC13.96□□□□□ -0.17
H3F3AP84243 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC13.96□□□□□ -0.17
H3F3AP84243 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC13.96□□□□□ -0.17
H3F3AP84243 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC13.96□□□□□ -0.17
H3F3AP84243 TPRX2P-201ENST00000535362 881 ntBASIC13.96□□□□□ -0.17
H3F3AP84243 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC13.96□□□□□ -0.17
H3F3AP84243 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC13.96□□□□□ -0.17
H3F3AP84243 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC13.96□□□□□ -0.17
H3F3AP84243 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC13.96□□□□□ -0.17
H3F3AP84243 MIR4745-201ENST00000577608 62 ntBASIC13.96□□□□□ -0.17
H3F3AP84243 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC13.96□□□□□ -0.17
H3F3AP84243 AC099568.2-201ENST00000609194 695 ntBASIC13.96□□□□□ -0.17
H3F3AP84243 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC13.96□□□□□ -0.17
H3F3AP84243 BID-213ENST00000615414 2236 ntTSL 5 BASIC13.96□□□□□ -0.17
H3F3AP84243 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
H3F3AP84243 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC13.96□□□□□ -0.17
H3F3AP84243 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
H3F3AP84243 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
H3F3AP84243 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
H3F3AP84243 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
H3F3AP84243 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
H3F3AP84243 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
H3F3AP84243 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
H3F3AP84243 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC13.96□□□□□ -0.18
H3F3AP84243 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.18
H3F3AP84243 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
H3F3AP84243 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
H3F3AP84243 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC13.95□□□□□ -0.18
H3F3AP84243 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
H3F3AP84243 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
H3F3AP84243 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
H3F3AP84243 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
H3F3AP84243 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC13.95□□□□□ -0.18
H3F3AP84243 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
H3F3AP84243 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
H3F3AP84243 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
H3F3AP84243 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
H3F3AP84243 CLK3P2-201ENST00000427566 1453 ntBASIC13.95□□□□□ -0.18
H3F3AP84243 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
H3F3AP84243 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
H3F3AP84243 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
H3F3AP84243 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
H3F3AP84243 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
H3F3AP84243 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
H3F3AP84243 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
H3F3AP84243 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC13.95□□□□□ -0.18
H3F3AP84243 AC112693.3-201ENST00000624819 1983 ntBASIC13.95□□□□□ -0.18
H3F3AP84243 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
H3F3AP84243 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
H3F3AP84243 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
H3F3AP84243 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC13.95□□□□□ -0.18
H3F3AP84243 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC13.95□□□□□ -0.18
H3F3AP84243 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
H3F3AP84243 AC236430.1-201ENST00000402231 743 ntBASIC13.95□□□□□ -0.18
H3F3AP84243 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC13.95□□□□□ -0.18
H3F3AP84243 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
H3F3AP84243 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
H3F3AP84243 OARD1-208ENST00000469104 704 ntTSL 2 BASIC13.95□□□□□ -0.18
H3F3AP84243 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC13.95□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms