Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC14.66□□□□□ -0.06
COL5A1P20908 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL5A1P20908 AC091046.1-201ENST00000331871 207 ntBASIC14.66□□□□□ -0.06
COL5A1P20908 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL5A1P20908 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC14.66□□□□□ -0.06
COL5A1P20908 AC234782.1-201ENST00000451950 919 ntBASIC14.66□□□□□ -0.06
COL5A1P20908 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC14.66□□□□□ -0.06
COL5A1P20908 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC14.66□□□□□ -0.06
COL5A1P20908 CFL1-214ENST00000534769 758 ntTSL 2 BASIC14.66□□□□□ -0.06
COL5A1P20908 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
COL5A1P20908 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL5A1P20908 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC14.66□□□□□ -0.06
COL5A1P20908 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL5A1P20908 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC14.66□□□□□ -0.06
COL5A1P20908 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
COL5A1P20908 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL5A1P20908 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC14.66□□□□□ -0.06
COL5A1P20908 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
COL5A1P20908 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL5A1P20908 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL5A1P20908 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL5A1P20908 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL5A1P20908 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
COL5A1P20908 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC14.66□□□□□ -0.06
COL5A1P20908 RPL5P21-201ENST00000404620 815 ntBASIC14.66□□□□□ -0.06
COL5A1P20908 SLC16A6P1-201ENST00000413214 1059 ntBASIC14.66□□□□□ -0.06
COL5A1P20908 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC14.66□□□□□ -0.06
COL5A1P20908 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC14.66□□□□□ -0.06
COL5A1P20908 MIR5572-201ENST00000583188 137 ntBASIC14.66□□□□□ -0.06
COL5A1P20908 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL5A1P20908 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL5A1P20908 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC14.66□□□□□ -0.06
COL5A1P20908 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC14.66□□□□□ -0.06
COL5A1P20908 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL5A1P20908 AC004899.1-201ENST00000424687 1714 ntBASIC14.65□□□□□ -0.06
COL5A1P20908 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
COL5A1P20908 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC14.65□□□□□ -0.06
COL5A1P20908 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL5A1P20908 KRT8P29-201ENST00000420409 1371 ntBASIC14.65□□□□□ -0.06
COL5A1P20908 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL5A1P20908 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL5A1P20908 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC14.65□□□□□ -0.06
COL5A1P20908 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC14.65□□□□□ -0.06
COL5A1P20908 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL5A1P20908 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC14.65□□□□□ -0.06
COL5A1P20908 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC14.65□□□□□ -0.06
COL5A1P20908 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
COL5A1P20908 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC14.65□□□□□ -0.06
COL5A1P20908 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC14.65□□□□□ -0.06
COL5A1P20908 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL5A1P20908 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL5A1P20908 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL5A1P20908 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
COL5A1P20908 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL5A1P20908 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL5A1P20908 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC14.65□□□□□ -0.06
COL5A1P20908 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC14.65□□□□□ -0.06
COL5A1P20908 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
COL5A1P20908 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC14.65□□□□□ -0.06
COL5A1P20908 AC125604.1-201ENST00000496255 707 ntBASIC14.65□□□□□ -0.06
COL5A1P20908 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC14.65□□□□□ -0.06
COL5A1P20908 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC14.65□□□□□ -0.06
COL5A1P20908 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC14.65□□□□□ -0.06
COL5A1P20908 AC009955.4-201ENST00000597192 544 ntBASIC14.65□□□□□ -0.06
COL5A1P20908 AL358472.3-201ENST00000608147 415 ntBASIC14.65□□□□□ -0.06
COL5A1P20908 PCBP2-OT1-201ENST00000634357 590 ntBASIC14.65□□□□□ -0.06
COL5A1P20908 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC14.65□□□□□ -0.06
COL5A1P20908 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL5A1P20908 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL5A1P20908 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
COL5A1P20908 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL5A1P20908 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
COL5A1P20908 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL5A1P20908 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.07
COL5A1P20908 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC14.64□□□□□ -0.07
COL5A1P20908 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL5A1P20908 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL5A1P20908 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL5A1P20908 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
COL5A1P20908 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC14.64□□□□□ -0.07
COL5A1P20908 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC14.64□□□□□ -0.07
COL5A1P20908 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC14.64□□□□□ -0.07
COL5A1P20908 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL5A1P20908 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
COL5A1P20908 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL5A1P20908 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC14.64□□□□□ -0.07
COL5A1P20908 RPL17P11-201ENST00000417593 544 ntBASIC14.64□□□□□ -0.07
COL5A1P20908 AC011742.3-201ENST00000439053 820 ntBASIC14.64□□□□□ -0.07
COL5A1P20908 RNMTL1P1-201ENST00000454103 560 ntBASIC14.64□□□□□ -0.07
COL5A1P20908 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
COL5A1P20908 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC14.64□□□□□ -0.07
COL5A1P20908 AC116345.2-201ENST00000512837 523 ntBASIC14.64□□□□□ -0.07
COL5A1P20908 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
COL5A1P20908 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC14.64□□□□□ -0.07
COL5A1P20908 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC14.64□□□□□ -0.07
COL5A1P20908 AL160314.3-201ENST00000556041 767 ntBASIC14.64□□□□□ -0.07
COL5A1P20908 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC14.64□□□□□ -0.07
COL5A1P20908 AC103988.2-201ENST00000561804 725 ntBASIC14.64□□□□□ -0.07
COL5A1P20908 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL5A1P20908 AL133499.1-201ENST00000596207 608 ntBASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms