Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC15.78■□□□□ 0.12
VIMP08670 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC15.78■□□□□ 0.12
VIMP08670 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VIMP08670 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
VIMP08670 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VIMP08670 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VIMP08670 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VIMP08670 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
VIMP08670 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
VIMP08670 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VIMP08670 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VIMP08670 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.12
VIMP08670 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
VIMP08670 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
VIMP08670 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
VIMP08670 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VIMP08670 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC15.77■□□□□ 0.12
VIMP08670 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC15.77■□□□□ 0.12
VIMP08670 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VIMP08670 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VIMP08670 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VIMP08670 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.12
VIMP08670 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC15.77■□□□□ 0.12
VIMP08670 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
VIMP08670 HSPA7-201ENST00000445535 1927 ntBASIC15.77■□□□□ 0.12
VIMP08670 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
VIMP08670 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
VIMP08670 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC15.77■□□□□ 0.12
VIMP08670 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC15.77■□□□□ 0.12
VIMP08670 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
VIMP08670 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC15.77■□□□□ 0.12
VIMP08670 MPI-205ENST00000562606 1052 ntTSL 3 BASIC15.77■□□□□ 0.12
VIMP08670 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
VIMP08670 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC15.77■□□□□ 0.12
VIMP08670 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
VIMP08670 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
VIMP08670 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
VIMP08670 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
VIMP08670 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
VIMP08670 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
VIMP08670 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
VIMP08670 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC15.77■□□□□ 0.11
VIMP08670 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC15.77■□□□□ 0.11
VIMP08670 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
VIMP08670 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
VIMP08670 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.11
VIMP08670 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VIMP08670 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
VIMP08670 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
VIMP08670 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC15.76■□□□□ 0.11
VIMP08670 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
VIMP08670 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC15.76■□□□□ 0.11
VIMP08670 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC15.76■□□□□ 0.11
VIMP08670 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
VIMP08670 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VIMP08670 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC15.76■□□□□ 0.11
VIMP08670 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC15.76■□□□□ 0.11
VIMP08670 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
VIMP08670 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VIMP08670 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
VIMP08670 AC005332.1-201ENST00000577698 1310 ntBASIC15.76■□□□□ 0.11
VIMP08670 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
VIMP08670 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
VIMP08670 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC15.76■□□□□ 0.11
VIMP08670 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC15.76■□□□□ 0.11
VIMP08670 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
VIMP08670 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
VIMP08670 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VIMP08670 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
VIMP08670 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC15.76■□□□□ 0.11
VIMP08670 AL031133.1-201ENST00000406807 723 ntBASIC15.76■□□□□ 0.11
VIMP08670 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC15.76■□□□□ 0.11
VIMP08670 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
VIMP08670 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC15.76■□□□□ 0.11
VIMP08670 NMU-205ENST00000511469 756 ntTSL 3 BASIC15.76■□□□□ 0.11
VIMP08670 PTK2-216ENST00000519881 863 ntTSL 3 BASIC15.76■□□□□ 0.11
VIMP08670 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
VIMP08670 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC15.76■□□□□ 0.11
VIMP08670 RNF151-202ENST00000569210 853 ntTSL 2 BASIC15.76■□□□□ 0.11
VIMP08670 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC15.76■□□□□ 0.11
VIMP08670 AC069148.1-201ENST00000608741 768 ntBASIC15.76■□□□□ 0.11
VIMP08670 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC15.76■□□□□ 0.11
VIMP08670 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC15.76■□□□□ 0.11
VIMP08670 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VIMP08670 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
VIMP08670 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
VIMP08670 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC15.76■□□□□ 0.11
VIMP08670 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
VIMP08670 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
VIMP08670 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC15.76■□□□□ 0.11
VIMP08670 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VIMP08670 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VIMP08670 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC15.76■□□□□ 0.11
VIMP08670 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VIMP08670 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC15.76■□□□□ 0.11
VIMP08670 AC097359.2-201ENST00000604992 2389 ntBASIC15.76■□□□□ 0.11
VIMP08670 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
VIMP08670 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VIMP08670 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VIMP08670 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 118.8 ms