Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 AC074051.2-201ENST00000565115 352 ntBASIC12.65□□□□□ -0.38
HMGB3O15347 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
HMGB3O15347 WT1-AS_2.1-201ENST00000613208 137 ntBASIC12.65□□□□□ -0.38
HMGB3O15347 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC12.65□□□□□ -0.38
HMGB3O15347 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC12.65□□□□□ -0.38
HMGB3O15347 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC12.65□□□□□ -0.38
HMGB3O15347 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
HMGB3O15347 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC12.65□□□□□ -0.38
HMGB3O15347 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HMGB3O15347 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HMGB3O15347 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
HMGB3O15347 AL390755.1-201ENST00000623716 2027 ntBASIC12.65□□□□□ -0.38
HMGB3O15347 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
HMGB3O15347 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HMGB3O15347 SCN8A-209ENST00000627620 5943 ntAPPRIS ALT1 TSL 5 BASIC12.65□□□□□ -0.38
HMGB3O15347 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HMGB3O15347 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
HMGB3O15347 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HMGB3O15347 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
HMGB3O15347 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
HMGB3O15347 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC12.65□□□□□ -0.38
HMGB3O15347 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
HMGB3O15347 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC12.65□□□□□ -0.38
HMGB3O15347 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HMGB3O15347 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
HMGB3O15347 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HMGB3O15347 MYO18B-201ENST00000335473 8565 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.39
HMGB3O15347 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
HMGB3O15347 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
HMGB3O15347 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC12.64□□□□□ -0.39
HMGB3O15347 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC12.64□□□□□ -0.39
HMGB3O15347 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC12.64□□□□□ -0.39
HMGB3O15347 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HMGB3O15347 MXRA5Y-201ENST00000420610 8000 ntBASIC12.64□□□□□ -0.39
HMGB3O15347 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HMGB3O15347 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HMGB3O15347 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC12.64□□□□□ -0.39
HMGB3O15347 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HMGB3O15347 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
HMGB3O15347 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
HMGB3O15347 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
HMGB3O15347 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
HMGB3O15347 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC12.64□□□□□ -0.39
HMGB3O15347 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HMGB3O15347 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HMGB3O15347 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
HMGB3O15347 WASF3-202ENST00000361042 4823 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
HMGB3O15347 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HMGB3O15347 PLEKHM1P1-205ENST00000582986 5014 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
HMGB3O15347 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HMGB3O15347 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
HMGB3O15347 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
HMGB3O15347 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
HMGB3O15347 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
HMGB3O15347 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC12.64□□□□□ -0.39
HMGB3O15347 FXN-203ENST00000396366 922 ntTSL 2 BASIC12.64□□□□□ -0.39
HMGB3O15347 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC12.64□□□□□ -0.39
HMGB3O15347 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC12.64□□□□□ -0.39
HMGB3O15347 AC104076.2-201ENST00000448912 469 ntBASIC12.64□□□□□ -0.39
HMGB3O15347 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HMGB3O15347 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
HMGB3O15347 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HMGB3O15347 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
HMGB3O15347 AC022616.7-201ENST00000525383 220 ntBASIC12.64□□□□□ -0.39
HMGB3O15347 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
HMGB3O15347 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC12.64□□□□□ -0.39
HMGB3O15347 AL160237.2-201ENST00000556165 472 ntBASIC12.64□□□□□ -0.39
HMGB3O15347 DET1-205ENST00000558413 583 ntTSL 4 BASIC12.64□□□□□ -0.39
HMGB3O15347 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC12.64□□□□□ -0.39
HMGB3O15347 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC12.64□□□□□ -0.39
HMGB3O15347 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
HMGB3O15347 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC12.64□□□□□ -0.39
HMGB3O15347 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC12.64□□□□□ -0.39
HMGB3O15347 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
HMGB3O15347 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HMGB3O15347 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HMGB3O15347 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HMGB3O15347 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
HMGB3O15347 DAPK2-213ENST00000612884 8086 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
HMGB3O15347 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC12.64□□□□□ -0.39
HMGB3O15347 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC12.64□□□□□ -0.39
HMGB3O15347 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC12.64□□□□□ -0.39
HMGB3O15347 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC12.64□□□□□ -0.39
HMGB3O15347 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC12.64□□□□□ -0.39
HMGB3O15347 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC12.64□□□□□ -0.39
HMGB3O15347 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HMGB3O15347 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC12.64□□□□□ -0.39
HMGB3O15347 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC12.64□□□□□ -0.39
HMGB3O15347 ZFHX2-202ENST00000419474 9182 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
HMGB3O15347 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HMGB3O15347 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
HMGB3O15347 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC12.64□□□□□ -0.39
HMGB3O15347 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HMGB3O15347 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC12.63□□□□□ -0.39
HMGB3O15347 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC12.63□□□□□ -0.39
HMGB3O15347 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HMGB3O15347 LRRN2-201ENST00000367175 5036 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
HMGB3O15347 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC12.63□□□□□ -0.39
HMGB3O15347 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC12.63□□□□□ -0.39
HMGB3O15347 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms