Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CTDP1Q9Y5B0 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
CTDP1Q9Y5B0 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
CTDP1Q9Y5B0 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CTDP1Q9Y5B0 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CTDP1Q9Y5B0 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CTDP1Q9Y5B0 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CTDP1Q9Y5B0 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
CTDP1Q9Y5B0 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
CTDP1Q9Y5B0 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
CTDP1Q9Y5B0 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CTDP1Q9Y5B0 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC18.04■□□□□ 0.48
CTDP1Q9Y5B0 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
CTDP1Q9Y5B0 AP001582.1-201ENST00000525856 295 ntBASIC18.04■□□□□ 0.48
CTDP1Q9Y5B0 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CTDP1Q9Y5B0 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CTDP1Q9Y5B0 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC18.04■□□□□ 0.48
CTDP1Q9Y5B0 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC18.04■□□□□ 0.48
CTDP1Q9Y5B0 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CTDP1Q9Y5B0 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CTDP1Q9Y5B0 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC18.04■□□□□ 0.48
CTDP1Q9Y5B0 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CTDP1Q9Y5B0 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CTDP1Q9Y5B0 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CTDP1Q9Y5B0 FLII-221ENST00000578558 2377 ntTSL 5 BASIC18.04■□□□□ 0.48
CTDP1Q9Y5B0 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CTDP1Q9Y5B0 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CTDP1Q9Y5B0 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC18.04■□□□□ 0.48
CTDP1Q9Y5B0 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CTDP1Q9Y5B0 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
CTDP1Q9Y5B0 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
CTDP1Q9Y5B0 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
CTDP1Q9Y5B0 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC18.03■□□□□ 0.48
CTDP1Q9Y5B0 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
CTDP1Q9Y5B0 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
CTDP1Q9Y5B0 TP73-209ENST00000603362 1668 ntTSL 5 BASIC18.03■□□□□ 0.48
CTDP1Q9Y5B0 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
CTDP1Q9Y5B0 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
CTDP1Q9Y5B0 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
CTDP1Q9Y5B0 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC18.03■□□□□ 0.48
CTDP1Q9Y5B0 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC18.03■□□□□ 0.48
CTDP1Q9Y5B0 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CTDP1Q9Y5B0 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC18.03■□□□□ 0.48
CTDP1Q9Y5B0 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC18.03■□□□□ 0.48
CTDP1Q9Y5B0 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
CTDP1Q9Y5B0 AP001889.1-201ENST00000525414 633 ntBASIC18.03■□□□□ 0.48
CTDP1Q9Y5B0 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC18.03■□□□□ 0.48
CTDP1Q9Y5B0 CLUHP6-201ENST00000580789 941 ntBASIC18.03■□□□□ 0.48
CTDP1Q9Y5B0 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CTDP1Q9Y5B0 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC18.03■□□□□ 0.48
CTDP1Q9Y5B0 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
CTDP1Q9Y5B0 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CTDP1Q9Y5B0 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CTDP1Q9Y5B0 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CTDP1Q9Y5B0 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CTDP1Q9Y5B0 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CTDP1Q9Y5B0 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC18.03■□□□□ 0.48
CTDP1Q9Y5B0 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC18.03■□□□□ 0.48
CTDP1Q9Y5B0 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC18.03■□□□□ 0.48
CTDP1Q9Y5B0 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
CTDP1Q9Y5B0 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
CTDP1Q9Y5B0 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC18.03■□□□□ 0.48
CTDP1Q9Y5B0 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CTDP1Q9Y5B0 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC18.03■□□□□ 0.48
CTDP1Q9Y5B0 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CTDP1Q9Y5B0 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC18.02■□□□□ 0.48
CTDP1Q9Y5B0 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CTDP1Q9Y5B0 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CTDP1Q9Y5B0 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
CTDP1Q9Y5B0 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CTDP1Q9Y5B0 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CTDP1Q9Y5B0 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC18.02■□□□□ 0.48
CTDP1Q9Y5B0 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC18.02■□□□□ 0.48
CTDP1Q9Y5B0 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CTDP1Q9Y5B0 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CTDP1Q9Y5B0 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC18.02■□□□□ 0.48
CTDP1Q9Y5B0 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
CTDP1Q9Y5B0 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
CTDP1Q9Y5B0 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC18.02■□□□□ 0.48
CTDP1Q9Y5B0 STX1A-203ENST00000395155 783 ntTSL 2 BASIC18.02■□□□□ 0.48
CTDP1Q9Y5B0 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CTDP1Q9Y5B0 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC18.02■□□□□ 0.48
CTDP1Q9Y5B0 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CTDP1Q9Y5B0 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CTDP1Q9Y5B0 AC093433.1-201ENST00000458048 571 ntBASIC18.02■□□□□ 0.48
CTDP1Q9Y5B0 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC18.02■□□□□ 0.48
CTDP1Q9Y5B0 PRORSD1P-202ENST00000563365 2154 ntBASIC18.02■□□□□ 0.48
CTDP1Q9Y5B0 AC015910.1-201ENST00000579400 975 ntBASIC18.02■□□□□ 0.48
CTDP1Q9Y5B0 MIR4313-201ENST00000580760 101 ntBASIC18.02■□□□□ 0.48
CTDP1Q9Y5B0 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC18.02■□□□□ 0.48
CTDP1Q9Y5B0 AC107373.2-201ENST00000607735 490 ntBASIC18.02■□□□□ 0.48
CTDP1Q9Y5B0 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CTDP1Q9Y5B0 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CTDP1Q9Y5B0 HADH-212ENST00000638621 741 ntTSL 5 BASIC18.02■□□□□ 0.48
CTDP1Q9Y5B0 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CTDP1Q9Y5B0 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC18.02■□□□□ 0.47
CTDP1Q9Y5B0 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CTDP1Q9Y5B0 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
CTDP1Q9Y5B0 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CTDP1Q9Y5B0 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms