Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 5S_rRNA.22-201ENST00000614916 106 ntBASIC16.72■□□□□ 0.27
SIX2Q9NPC8 AC004840.1-201ENST00000636359 365 ntBASIC16.72■□□□□ 0.27
SIX2Q9NPC8 AL645728.2-202ENST00000641679 227 ntBASIC16.72■□□□□ 0.27
SIX2Q9NPC8 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
SIX2Q9NPC8 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC16.72■□□□□ 0.27
SIX2Q9NPC8 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SIX2Q9NPC8 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SIX2Q9NPC8 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
SIX2Q9NPC8 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SIX2Q9NPC8 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
SIX2Q9NPC8 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SIX2Q9NPC8 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SIX2Q9NPC8 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC16.72■□□□□ 0.27
SIX2Q9NPC8 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SIX2Q9NPC8 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SIX2Q9NPC8 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SIX2Q9NPC8 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SIX2Q9NPC8 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SIX2Q9NPC8 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SIX2Q9NPC8 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC16.71■□□□□ 0.27
SIX2Q9NPC8 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SIX2Q9NPC8 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC16.71■□□□□ 0.27
SIX2Q9NPC8 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
SIX2Q9NPC8 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC16.71■□□□□ 0.27
SIX2Q9NPC8 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC16.71■□□□□ 0.27
SIX2Q9NPC8 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SIX2Q9NPC8 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC16.71■□□□□ 0.27
SIX2Q9NPC8 FGD5P1-202ENST00000614866 2498 ntBASIC16.71■□□□□ 0.27
SIX2Q9NPC8 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SIX2Q9NPC8 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SIX2Q9NPC8 REXO1L4P-201ENST00000605109 1937 ntBASIC16.71■□□□□ 0.27
SIX2Q9NPC8 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SIX2Q9NPC8 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SIX2Q9NPC8 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
SIX2Q9NPC8 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC16.71■□□□□ 0.27
SIX2Q9NPC8 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC16.71■□□□□ 0.27
SIX2Q9NPC8 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC16.71■□□□□ 0.27
SIX2Q9NPC8 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC16.71■□□□□ 0.27
SIX2Q9NPC8 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC16.71■□□□□ 0.27
SIX2Q9NPC8 AC241585.1-201ENST00000433527 519 ntBASIC16.71■□□□□ 0.27
SIX2Q9NPC8 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC16.71■□□□□ 0.27
SIX2Q9NPC8 PFN2-205ENST00000461868 613 ntTSL 2 BASIC16.71■□□□□ 0.27
SIX2Q9NPC8 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC16.71■□□□□ 0.27
SIX2Q9NPC8 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC16.71■□□□□ 0.27
SIX2Q9NPC8 AC011467.4-201ENST00000594891 528 ntBASIC16.71■□□□□ 0.27
SIX2Q9NPC8 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
SIX2Q9NPC8 AC008738.7-201ENST00000609744 511 ntBASIC16.71■□□□□ 0.27
SIX2Q9NPC8 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
SIX2Q9NPC8 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SIX2Q9NPC8 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
SIX2Q9NPC8 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC16.71■□□□□ 0.27
SIX2Q9NPC8 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
SIX2Q9NPC8 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC16.71■□□□□ 0.27
SIX2Q9NPC8 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
SIX2Q9NPC8 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
SIX2Q9NPC8 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.26
SIX2Q9NPC8 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC16.7■□□□□ 0.26
SIX2Q9NPC8 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
SIX2Q9NPC8 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
SIX2Q9NPC8 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SIX2Q9NPC8 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC16.7■□□□□ 0.26
SIX2Q9NPC8 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SIX2Q9NPC8 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SIX2Q9NPC8 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
SIX2Q9NPC8 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SIX2Q9NPC8 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SIX2Q9NPC8 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SIX2Q9NPC8 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC16.7■□□□□ 0.26
SIX2Q9NPC8 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SIX2Q9NPC8 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
SIX2Q9NPC8 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC16.7■□□□□ 0.26
SIX2Q9NPC8 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SIX2Q9NPC8 PON3-203ENST00000427422 894 ntTSL 3 BASIC16.7■□□□□ 0.26
SIX2Q9NPC8 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC16.7■□□□□ 0.26
SIX2Q9NPC8 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC16.7■□□□□ 0.26
SIX2Q9NPC8 AC004890.2-204ENST00000481968 304 ntBASIC16.7■□□□□ 0.26
SIX2Q9NPC8 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC16.7■□□□□ 0.26
SIX2Q9NPC8 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC16.7■□□□□ 0.26
SIX2Q9NPC8 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC16.7■□□□□ 0.26
SIX2Q9NPC8 AL158212.4-201ENST00000624062 1286 ntBASIC16.7■□□□□ 0.26
SIX2Q9NPC8 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
SIX2Q9NPC8 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC16.7■□□□□ 0.26
SIX2Q9NPC8 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SIX2Q9NPC8 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC16.7■□□□□ 0.26
SIX2Q9NPC8 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
SIX2Q9NPC8 AL359258.3-201ENST00000622910 2331 ntBASIC16.7■□□□□ 0.26
SIX2Q9NPC8 SLC9A7P1-202ENST00000556476 2239 ntBASIC16.7■□□□□ 0.26
SIX2Q9NPC8 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SIX2Q9NPC8 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC16.7■□□□□ 0.26
SIX2Q9NPC8 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SIX2Q9NPC8 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC16.7■□□□□ 0.26
SIX2Q9NPC8 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SIX2Q9NPC8 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC16.7■□□□□ 0.26
SIX2Q9NPC8 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC16.7■□□□□ 0.26
SIX2Q9NPC8 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC16.69■□□□□ 0.26
SIX2Q9NPC8 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SIX2Q9NPC8 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SIX2Q9NPC8 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
SIX2Q9NPC8 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC16.69■□□□□ 0.26
SIX2Q9NPC8 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms