Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRIM39Q9HCM9 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRIM39Q9HCM9 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRIM39Q9HCM9 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRIM39Q9HCM9 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC15.55■□□□□ 0.08
TRIM39Q9HCM9 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
TRIM39Q9HCM9 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC15.55■□□□□ 0.08
TRIM39Q9HCM9 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC15.55■□□□□ 0.08
TRIM39Q9HCM9 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRIM39Q9HCM9 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC15.55■□□□□ 0.08
TRIM39Q9HCM9 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TRIM39Q9HCM9 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC15.55■□□□□ 0.08
TRIM39Q9HCM9 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRIM39Q9HCM9 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRIM39Q9HCM9 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC15.55■□□□□ 0.08
TRIM39Q9HCM9 PKIG-203ENST00000372887 769 ntTSL 3 BASIC15.55■□□□□ 0.08
TRIM39Q9HCM9 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TRIM39Q9HCM9 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TRIM39Q9HCM9 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC15.55■□□□□ 0.08
TRIM39Q9HCM9 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC15.55■□□□□ 0.08
TRIM39Q9HCM9 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC15.55■□□□□ 0.08
TRIM39Q9HCM9 SPDYE22P-201ENST00000582158 798 ntBASIC15.55■□□□□ 0.08
TRIM39Q9HCM9 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC15.55■□□□□ 0.08
TRIM39Q9HCM9 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC15.55■□□□□ 0.08
TRIM39Q9HCM9 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
TRIM39Q9HCM9 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRIM39Q9HCM9 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC15.55■□□□□ 0.08
TRIM39Q9HCM9 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRIM39Q9HCM9 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TRIM39Q9HCM9 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 COX20P2-201ENST00000452636 358 ntBASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 AC027307.3-201ENST00000594262 1100 ntBASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 AL662799.1-202ENST00000614205 422 ntBASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM39Q9HCM9 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM39Q9HCM9 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM39Q9HCM9 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM39Q9HCM9 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC15.53■□□□□ 0.08
TRIM39Q9HCM9 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC15.53■□□□□ 0.08
TRIM39Q9HCM9 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM39Q9HCM9 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM39Q9HCM9 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC15.53■□□□□ 0.08
TRIM39Q9HCM9 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM39Q9HCM9 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
TRIM39Q9HCM9 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM39Q9HCM9 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
TRIM39Q9HCM9 AL035633.1-201ENST00000406139 838 ntBASIC15.53■□□□□ 0.08
TRIM39Q9HCM9 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC15.53■□□□□ 0.08
TRIM39Q9HCM9 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM39Q9HCM9 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC15.53■□□□□ 0.08
TRIM39Q9HCM9 MDH2-205ENST00000461263 648 ntTSL 2 BASIC15.53■□□□□ 0.08
TRIM39Q9HCM9 TAF8-206ENST00000472818 719 ntTSL 2 BASIC15.53■□□□□ 0.08
TRIM39Q9HCM9 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms