Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
CPNE4Q96A23 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC14.08□□□□□ -0.15
CPNE4Q96A23 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.15
CPNE4Q96A23 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
CPNE4Q96A23 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CPNE4Q96A23 AC007541.1-201ENST00000570282 1469 ntBASIC14.08□□□□□ -0.16
CPNE4Q96A23 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CPNE4Q96A23 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CPNE4Q96A23 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC14.08□□□□□ -0.16
CPNE4Q96A23 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC14.08□□□□□ -0.16
CPNE4Q96A23 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC14.08□□□□□ -0.16
CPNE4Q96A23 CD81-207ENST00000481687 890 ntTSL 2 BASIC14.08□□□□□ -0.16
CPNE4Q96A23 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC14.08□□□□□ -0.16
CPNE4Q96A23 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC14.08□□□□□ -0.16
CPNE4Q96A23 RARRES2P5-201ENST00000564013 466 ntBASIC14.08□□□□□ -0.16
CPNE4Q96A23 COX11-202ENST00000571584 1108 ntTSL 2 BASIC14.08□□□□□ -0.16
CPNE4Q96A23 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CPNE4Q96A23 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CPNE4Q96A23 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC14.08□□□□□ -0.16
CPNE4Q96A23 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CPNE4Q96A23 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CPNE4Q96A23 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CPNE4Q96A23 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC14.08□□□□□ -0.16
CPNE4Q96A23 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC14.08□□□□□ -0.16
CPNE4Q96A23 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CPNE4Q96A23 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
CPNE4Q96A23 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CPNE4Q96A23 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CPNE4Q96A23 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CPNE4Q96A23 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CPNE4Q96A23 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC14.08□□□□□ -0.16
CPNE4Q96A23 AP003680.1-201ENST00000598970 3660 ntBASIC14.08□□□□□ -0.16
CPNE4Q96A23 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CPNE4Q96A23 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CPNE4Q96A23 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CPNE4Q96A23 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
CPNE4Q96A23 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CPNE4Q96A23 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC14.07□□□□□ -0.16
CPNE4Q96A23 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CPNE4Q96A23 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CPNE4Q96A23 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC14.07□□□□□ -0.16
CPNE4Q96A23 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
CPNE4Q96A23 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CPNE4Q96A23 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CPNE4Q96A23 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CPNE4Q96A23 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CPNE4Q96A23 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
CPNE4Q96A23 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CPNE4Q96A23 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CPNE4Q96A23 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
CPNE4Q96A23 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC14.07□□□□□ -0.16
CPNE4Q96A23 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CPNE4Q96A23 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC14.07□□□□□ -0.16
CPNE4Q96A23 GNAQP1-201ENST00000444815 1067 ntBASIC14.07□□□□□ -0.16
CPNE4Q96A23 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC14.07□□□□□ -0.16
CPNE4Q96A23 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC14.07□□□□□ -0.16
CPNE4Q96A23 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC14.07□□□□□ -0.16
CPNE4Q96A23 AC036164.1-201ENST00000570544 333 ntBASIC14.07□□□□□ -0.16
CPNE4Q96A23 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC14.07□□□□□ -0.16
CPNE4Q96A23 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC14.07□□□□□ -0.16
CPNE4Q96A23 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC14.07□□□□□ -0.16
CPNE4Q96A23 AC027307.3-201ENST00000594262 1100 ntBASIC14.07□□□□□ -0.16
CPNE4Q96A23 AC099568.2-201ENST00000609194 695 ntBASIC14.07□□□□□ -0.16
CPNE4Q96A23 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CPNE4Q96A23 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CPNE4Q96A23 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC14.07□□□□□ -0.16
CPNE4Q96A23 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC14.07□□□□□ -0.16
CPNE4Q96A23 AC132872.4-202ENST00000622924 2756 ntBASIC14.07□□□□□ -0.16
CPNE4Q96A23 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CPNE4Q96A23 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC14.07□□□□□ -0.16
CPNE4Q96A23 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CPNE4Q96A23 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC14.07□□□□□ -0.16
CPNE4Q96A23 ILF3-AS1-201ENST00000591501 1983 ntBASIC14.07□□□□□ -0.16
CPNE4Q96A23 SLC7A15P-201ENST00000424028 1363 ntBASIC14.07□□□□□ -0.16
CPNE4Q96A23 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
CPNE4Q96A23 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CPNE4Q96A23 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
CPNE4Q96A23 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC14.07□□□□□ -0.16
CPNE4Q96A23 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC14.07□□□□□ -0.16
CPNE4Q96A23 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CPNE4Q96A23 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CPNE4Q96A23 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CPNE4Q96A23 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CPNE4Q96A23 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC14.06□□□□□ -0.16
CPNE4Q96A23 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC14.06□□□□□ -0.16
CPNE4Q96A23 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CPNE4Q96A23 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC14.06□□□□□ -0.16
CPNE4Q96A23 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
CPNE4Q96A23 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC14.06□□□□□ -0.16
CPNE4Q96A23 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC14.06□□□□□ -0.16
CPNE4Q96A23 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CPNE4Q96A23 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CPNE4Q96A23 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CPNE4Q96A23 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CPNE4Q96A23 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CPNE4Q96A23 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CPNE4Q96A23 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC14.06□□□□□ -0.16
CPNE4Q96A23 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CPNE4Q96A23 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CPNE4Q96A23 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms