Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC15.66■□□□□ 0.1
HDDC3Q8N4P3 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HDDC3Q8N4P3 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC15.66■□□□□ 0.1
HDDC3Q8N4P3 AC026410.3-201ENST00000514280 936 ntBASIC15.66■□□□□ 0.1
HDDC3Q8N4P3 AP001889.1-201ENST00000525414 633 ntBASIC15.66■□□□□ 0.1
HDDC3Q8N4P3 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC15.66■□□□□ 0.1
HDDC3Q8N4P3 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HDDC3Q8N4P3 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC15.66■□□□□ 0.1
HDDC3Q8N4P3 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC15.66■□□□□ 0.1
HDDC3Q8N4P3 AP001063.1-201ENST00000568332 529 ntBASIC15.66■□□□□ 0.1
HDDC3Q8N4P3 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HDDC3Q8N4P3 AC010328.2-201ENST00000597698 1111 ntBASIC15.66■□□□□ 0.1
HDDC3Q8N4P3 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC15.66■□□□□ 0.1
HDDC3Q8N4P3 AC005252.2-201ENST00000624630 1141 ntBASIC15.66■□□□□ 0.1
HDDC3Q8N4P3 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HDDC3Q8N4P3 USE1-206ENST00000595101 1776 ntTSL 2 BASIC15.66■□□□□ 0.1
HDDC3Q8N4P3 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
HDDC3Q8N4P3 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC15.66■□□□□ 0.1
HDDC3Q8N4P3 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HDDC3Q8N4P3 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC15.66■□□□□ 0.1
HDDC3Q8N4P3 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HDDC3Q8N4P3 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HDDC3Q8N4P3 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HDDC3Q8N4P3 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HDDC3Q8N4P3 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HDDC3Q8N4P3 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 AC005229.1-201ENST00000392885 409 ntBASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 BAATP1-201ENST00000412284 1225 ntBASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 AC093433.1-201ENST00000458048 571 ntBASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 TPI1-206ENST00000488464 791 ntTSL 5 BASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 AC108725.1-201ENST00000495472 409 ntBASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 AC079316.1-201ENST00000548397 411 ntBASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 AC093813.1-201ENST00000605066 256 ntBASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 AC107373.2-201ENST00000607735 490 ntBASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 AC134312.5-201ENST00000568031 1313 ntBASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 LOX-206ENST00000639739 1626 ntTSL 5 BASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC15.65■□□□□ 0.1
HDDC3Q8N4P3 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
HDDC3Q8N4P3 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
HDDC3Q8N4P3 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HDDC3Q8N4P3 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HDDC3Q8N4P3 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
HDDC3Q8N4P3 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC15.64■□□□□ 0.09
HDDC3Q8N4P3 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HDDC3Q8N4P3 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
HDDC3Q8N4P3 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HDDC3Q8N4P3 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
HDDC3Q8N4P3 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
HDDC3Q8N4P3 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
HDDC3Q8N4P3 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
HDDC3Q8N4P3 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
HDDC3Q8N4P3 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HDDC3Q8N4P3 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HDDC3Q8N4P3 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
HDDC3Q8N4P3 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
HDDC3Q8N4P3 AC092506.1-202ENST00000401022 528 ntBASIC15.64■□□□□ 0.09
HDDC3Q8N4P3 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC15.64■□□□□ 0.09
HDDC3Q8N4P3 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC15.64■□□□□ 0.09
HDDC3Q8N4P3 AC004945.1-201ENST00000416738 983 ntBASIC15.64■□□□□ 0.09
HDDC3Q8N4P3 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC15.64■□□□□ 0.09
HDDC3Q8N4P3 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC15.64■□□□□ 0.09
HDDC3Q8N4P3 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
HDDC3Q8N4P3 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
HDDC3Q8N4P3 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms