Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 HNF4A-204ENST00000415691 2302 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 QSOX1-202ENST00000367602 9311 ntAPPRIS P3 TSL 1 (best) BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 EIF4G1-207ENST00000411531 4683 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 EEF2K-201ENST00000263026 7388 ntAPPRIS P1 TSL 5 BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 ENG-202ENST00000373203 3048 ntAPPRIS ALT2 TSL 1 (best) BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 MKRN1-201ENST00000255977 3151 ntAPPRIS P3 TSL 1 (best) BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 ESPL1-205ENST00000552462 6447 ntAPPRIS P1 TSL 5 BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 RTL10-202ENST00000405640 6785 ntAPPRIS P2 TSL 1 (best) BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 ARHGAP33-204ENST00000378944 4219 ntAPPRIS ALT2 TSL 2 BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 LILRB3-201ENST00000245620 2066 ntAPPRIS ALT2 TSL 1 (best) BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 METAP1D-201ENST00000315796 3419 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 EBF3-201ENST00000355311 2993 ntAPPRIS ALT1 TSL 5 BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 GPA33-201ENST00000367868 2802 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 SYK-203ENST00000375751 4936 ntAPPRIS ALT2 TSL 1 (best) BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 PIK3CD-202ENST00000377346 5203 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 ALOX15B-202ENST00000380183 2739 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 CICP1-201ENST00000416803 2410 ntBASIC9.69□□□□□ -0.86
LINC00643Q86TS7 FER1L4-204ENST00000430275 3281 ntTSL 5 BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 STRIP2-202ENST00000435494 2866 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 JMJD6-203ENST00000445478 5303 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 ENG-204ENST00000480266 2804 ntAPPRIS ALT2 TSL 2 BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 AL139193.2-201ENST00000553712 1954 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 ANKRD20A1-201ENST00000562196 3379 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 CETP-203ENST00000566128 1733 ntTSL 5 BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 MBP-237ENST00000579129 1052 ntTSL 5 BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 MPP2-219ENST00000612133 4938 ntTSL 5 BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 PCDHB17P-202ENST00000623466 3066 ntBASIC9.69□□□□□ -0.86
LINC00643Q86TS7 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 OR2V1-204ENST00000641551 2423 ntAPPRIS P1 BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 GFRA1-203ENST00000369236 9109 ntAPPRIS P3 TSL 1 (best) BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 CACNA1G-222ENST00000510366 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 PPP1R12A-201ENST00000261207 5582 ntAPPRIS P1 TSL 5 BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 LDB3-205ENST00000429277 5436 ntTSL 2 BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 NCLN-201ENST00000246117 4005 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 LRPAP1-202ENST00000500728 7819 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 RBM10-201ENST00000329236 3201 ntAPPRIS ALT2 TSL 1 (best) BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 PCCB-210ENST00000471595 6090 ntAPPRIS ALT2 TSL 1 (best) BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 RAB37-204ENST00000392613 2617 ntAPPRIS ALT1 TSL 2 BASIC9.69□□□□□ -0.86
LINC00643Q86TS7 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 COPS7B-223ENST00000611614 2468 ntTSL 3 BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 BTNL8-201ENST00000231229 2229 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 TMUB2-215ENST00000592825 2151 ntTSL 3 BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 ADAMTSL4-202ENST00000369038 4167 ntAPPRIS P3 TSL 1 (best) BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 RRM2B-211ENST00000621845 3483 ntTSL 2 BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 TMEM233-201ENST00000426426 3081 ntAPPRIS P1 TSL 2 BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 ZBTB45P2-201ENST00000452245 1531 ntBASIC9.68□□□□□ -0.86
LINC00643Q86TS7 TBC1D3P5-201ENST00000579401 1545 ntBASIC9.68□□□□□ -0.86
LINC00643Q86TS7 MYO9B-204ENST00000594824 7595 ntAPPRIS P1 TSL 5 BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 CROT-203ENST00000419147 2959 ntTSL 2 BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 LRRC15-201ENST00000347624 5883 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 DLGAP2-214ENST00000612087 10088 ntAPPRIS P2 TSL 5 BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 WASH6P-202ENST00000359512 1437 ntBASIC9.68□□□□□ -0.86
LINC00643Q86TS7 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 PRPF4-201ENST00000374198 2787 ntAPPRIS P3 TSL 1 (best) BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 KRT18P11-201ENST00000435214 1283 ntBASIC9.68□□□□□ -0.86
LINC00643Q86TS7 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC9.68□□□□□ -0.86
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms