Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
COL18A1P39060 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL18A1P39060 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL18A1P39060 HNRNPA1P41-201ENST00000397777 928 ntBASIC20.06■□□□□ 0.8
COL18A1P39060 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC20.06■□□□□ 0.8
COL18A1P39060 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC20.06■□□□□ 0.8
COL18A1P39060 AC098935.1-201ENST00000446057 611 ntBASIC20.06■□□□□ 0.8
COL18A1P39060 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC20.06■□□□□ 0.8
COL18A1P39060 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC20.06■□□□□ 0.8
COL18A1P39060 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL18A1P39060 PAM16-211ENST00000575848 518 ntTSL 3 BASIC20.06■□□□□ 0.8
COL18A1P39060 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
COL18A1P39060 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC20.06■□□□□ 0.8
COL18A1P39060 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC20.06■□□□□ 0.8
COL18A1P39060 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC20.06■□□□□ 0.8
COL18A1P39060 AL353726.2-201ENST00000623259 884 ntBASIC20.06■□□□□ 0.8
COL18A1P39060 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
COL18A1P39060 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL18A1P39060 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL18A1P39060 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL18A1P39060 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL18A1P39060 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
COL18A1P39060 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
COL18A1P39060 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.06■□□□□ 0.8
COL18A1P39060 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
COL18A1P39060 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC20.06■□□□□ 0.8
COL18A1P39060 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
COL18A1P39060 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
COL18A1P39060 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL18A1P39060 ZBTB45P1-201ENST00000452761 1456 ntBASIC20.06■□□□□ 0.8
COL18A1P39060 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
COL18A1P39060 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL18A1P39060 KRT18P36-201ENST00000411618 1276 ntBASIC20.06■□□□□ 0.8
COL18A1P39060 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC20.06■□□□□ 0.8
COL18A1P39060 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC20.06■□□□□ 0.8
COL18A1P39060 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC20.06■□□□□ 0.8
COL18A1P39060 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
COL18A1P39060 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL18A1P39060 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL18A1P39060 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC20.05■□□□□ 0.8
COL18A1P39060 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
COL18A1P39060 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL18A1P39060 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL18A1P39060 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL18A1P39060 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL18A1P39060 KRT8P21-201ENST00000430398 1491 ntBASIC20.05■□□□□ 0.8
COL18A1P39060 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL18A1P39060 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC20.05■□□□□ 0.8
COL18A1P39060 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL18A1P39060 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
COL18A1P39060 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL18A1P39060 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC20.05■□□□□ 0.8
COL18A1P39060 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL18A1P39060 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL18A1P39060 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL18A1P39060 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL18A1P39060 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL18A1P39060 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC20.05■□□□□ 0.8
COL18A1P39060 MIR3677-201ENST00000578964 60 ntBASIC20.05■□□□□ 0.8
COL18A1P39060 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL18A1P39060 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC20.05■□□□□ 0.8
COL18A1P39060 RPL35-206ENST00000629845 340 ntTSL 5 BASIC20.05■□□□□ 0.8
COL18A1P39060 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC20.05■□□□□ 0.8
COL18A1P39060 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL18A1P39060 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
COL18A1P39060 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL18A1P39060 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC20.05■□□□□ 0.8
COL18A1P39060 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL18A1P39060 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
COL18A1P39060 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL18A1P39060 STK33-217ENST00000534493 1895 ntTSL 2 BASIC20.05■□□□□ 0.8
COL18A1P39060 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
COL18A1P39060 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL18A1P39060 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL18A1P39060 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC20.04■□□□□ 0.8
COL18A1P39060 AC020910.5-201ENST00000623668 1865 ntBASIC20.04■□□□□ 0.8
COL18A1P39060 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL18A1P39060 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC20.04■□□□□ 0.8
COL18A1P39060 CTBP2P4-201ENST00000513884 920 ntBASIC20.04■□□□□ 0.8
COL18A1P39060 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
COL18A1P39060 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC20.04■□□□□ 0.8
COL18A1P39060 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC20.04■□□□□ 0.8
COL18A1P39060 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL18A1P39060 AC100827.2-201ENST00000563214 1194 ntBASIC20.04■□□□□ 0.8
COL18A1P39060 AC051619.9-201ENST00000623237 597 ntBASIC20.04■□□□□ 0.8
COL18A1P39060 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL18A1P39060 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL18A1P39060 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL18A1P39060 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL18A1P39060 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL18A1P39060 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL18A1P39060 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC20.04■□□□□ 0.8
COL18A1P39060 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL18A1P39060 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC20.04■□□□□ 0.8
COL18A1P39060 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
COL18A1P39060 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
COL18A1P39060 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL18A1P39060 AC006058.4-201ENST00000624016 1670 ntBASIC20.03■□□□□ 0.8
COL18A1P39060 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL18A1P39060 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms