Protein–RNA interactions for Protein: P32297

CHRNA3, Neuronal acetylcholine receptor subunit alpha-3, humanhuman

Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3P32297 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CHRNA3P32297 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC16.54■□□□□ 0.24
CHRNA3P32297 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CHRNA3P32297 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CHRNA3P32297 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CHRNA3P32297 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CHRNA3P32297 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CHRNA3P32297 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CHRNA3P32297 GPI-205ENST00000586425 1799 ntTSL 5 BASIC16.54■□□□□ 0.24
CHRNA3P32297 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
CHRNA3P32297 AC106881.1-201ENST00000605849 3329 ntBASIC16.53■□□□□ 0.24
CHRNA3P32297 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
CHRNA3P32297 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CHRNA3P32297 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CHRNA3P32297 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CHRNA3P32297 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CHRNA3P32297 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CHRNA3P32297 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
CHRNA3P32297 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CHRNA3P32297 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC16.53■□□□□ 0.24
CHRNA3P32297 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC16.53■□□□□ 0.24
CHRNA3P32297 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CHRNA3P32297 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC16.53■□□□□ 0.24
CHRNA3P32297 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC16.53■□□□□ 0.24
CHRNA3P32297 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CHRNA3P32297 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC16.53■□□□□ 0.24
CHRNA3P32297 CENPM-205ENST00000404067 905 ntTSL 3 BASIC16.53■□□□□ 0.24
CHRNA3P32297 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC16.53■□□□□ 0.24
CHRNA3P32297 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC16.53■□□□□ 0.24
CHRNA3P32297 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC16.53■□□□□ 0.24
CHRNA3P32297 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC16.53■□□□□ 0.24
CHRNA3P32297 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC16.53■□□□□ 0.24
CHRNA3P32297 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC16.53■□□□□ 0.24
CHRNA3P32297 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.24
CHRNA3P32297 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC16.53■□□□□ 0.24
CHRNA3P32297 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC16.53■□□□□ 0.24
CHRNA3P32297 GSN-203ENST00000373808 2664 ntTSL 2 BASIC16.53■□□□□ 0.24
CHRNA3P32297 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CHRNA3P32297 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CHRNA3P32297 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC16.53■□□□□ 0.24
CHRNA3P32297 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CHRNA3P32297 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CHRNA3P32297 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
CHRNA3P32297 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CHRNA3P32297 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CHRNA3P32297 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CHRNA3P32297 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC16.53■□□□□ 0.24
CHRNA3P32297 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
CHRNA3P32297 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC16.52■□□□□ 0.24
CHRNA3P32297 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC16.52■□□□□ 0.24
CHRNA3P32297 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CHRNA3P32297 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
CHRNA3P32297 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CHRNA3P32297 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CHRNA3P32297 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CHRNA3P32297 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CHRNA3P32297 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
CHRNA3P32297 AC013726.1-201ENST00000563747 2285 ntBASIC16.52■□□□□ 0.24
CHRNA3P32297 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CHRNA3P32297 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CHRNA3P32297 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC16.52■□□□□ 0.24
CHRNA3P32297 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CHRNA3P32297 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CHRNA3P32297 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
CHRNA3P32297 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CHRNA3P32297 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CHRNA3P32297 VMA21-202ENST00000370361 693 ntTSL 5 BASIC16.52■□□□□ 0.24
CHRNA3P32297 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC16.52■□□□□ 0.24
CHRNA3P32297 AL353705.2-201ENST00000428243 662 ntBASIC16.52■□□□□ 0.24
CHRNA3P32297 WDR53-203ENST00000429115 683 ntTSL 2 BASIC16.52■□□□□ 0.24
CHRNA3P32297 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC16.52■□□□□ 0.24
CHRNA3P32297 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC16.52■□□□□ 0.24
CHRNA3P32297 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.24
CHRNA3P32297 BCRP1-201ENST00000444246 691 ntBASIC16.52■□□□□ 0.24
CHRNA3P32297 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC16.52■□□□□ 0.24
CHRNA3P32297 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC16.52■□□□□ 0.24
CHRNA3P32297 RNA5SP421-201ENST00000516864 134 ntBASIC16.52■□□□□ 0.24
CHRNA3P32297 IGHV3-42-201ENST00000520410 361 ntBASIC16.52■□□□□ 0.24
CHRNA3P32297 MAX-210ENST00000555419 765 ntTSL 5 BASIC16.52■□□□□ 0.24
CHRNA3P32297 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
CHRNA3P32297 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CHRNA3P32297 AL096865.1-201ENST00000606796 927 ntBASIC16.52■□□□□ 0.24
CHRNA3P32297 AL158211.3-201ENST00000607385 239 ntBASIC16.52■□□□□ 0.24
CHRNA3P32297 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC16.52■□□□□ 0.24
CHRNA3P32297 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC16.52■□□□□ 0.24
CHRNA3P32297 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CHRNA3P32297 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
CHRNA3P32297 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
CHRNA3P32297 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CHRNA3P32297 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
CHRNA3P32297 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
CHRNA3P32297 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
CHRNA3P32297 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CHRNA3P32297 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CHRNA3P32297 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CHRNA3P32297 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CHRNA3P32297 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC16.52■□□□□ 0.23
CHRNA3P32297 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CHRNA3P32297 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHRNA3P32297 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms