Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC15.97■□□□□ 0.15
COL9A1P20849 DNM1P30-201ENST00000563586 452 ntBASIC15.97■□□□□ 0.15
COL9A1P20849 MIR6842-201ENST00000612539 65 ntBASIC15.97■□□□□ 0.15
COL9A1P20849 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC15.97■□□□□ 0.15
COL9A1P20849 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL9A1P20849 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC15.97■□□□□ 0.15
COL9A1P20849 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC15.97■□□□□ 0.15
COL9A1P20849 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL9A1P20849 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
COL9A1P20849 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
COL9A1P20849 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
COL9A1P20849 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
COL9A1P20849 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
COL9A1P20849 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL9A1P20849 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
COL9A1P20849 AC022762.2-201ENST00000600308 1353 ntBASIC15.97■□□□□ 0.15
COL9A1P20849 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC15.97■□□□□ 0.15
COL9A1P20849 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL9A1P20849 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC15.97■□□□□ 0.15
COL9A1P20849 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC15.97■□□□□ 0.15
COL9A1P20849 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC15.96■□□□□ 0.15
COL9A1P20849 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
COL9A1P20849 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC15.96■□□□□ 0.15
COL9A1P20849 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL9A1P20849 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL9A1P20849 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC15.96■□□□□ 0.15
COL9A1P20849 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC15.96■□□□□ 0.15
COL9A1P20849 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
COL9A1P20849 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL9A1P20849 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
COL9A1P20849 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL9A1P20849 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL9A1P20849 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL9A1P20849 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC15.96■□□□□ 0.15
COL9A1P20849 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
COL9A1P20849 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC15.96■□□□□ 0.15
COL9A1P20849 OARD1-204ENST00000464633 717 ntTSL 2 BASIC15.96■□□□□ 0.15
COL9A1P20849 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
COL9A1P20849 AC022137.2-201ENST00000503482 481 ntBASIC15.96■□□□□ 0.15
COL9A1P20849 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC15.96■□□□□ 0.15
COL9A1P20849 SLED1-202ENST00000512051 380 ntBASIC15.96■□□□□ 0.15
COL9A1P20849 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
COL9A1P20849 ATP2A1-AS1-201ENST00000561547 558 ntTSL 2 BASIC15.96■□□□□ 0.15
COL9A1P20849 SAMD11P1-201ENST00000571429 661 ntBASIC15.96■□□□□ 0.15
COL9A1P20849 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC15.96■□□□□ 0.15
COL9A1P20849 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC15.96■□□□□ 0.15
COL9A1P20849 HKR1-225ENST00000592168 566 ntTSL 4 BASIC15.96■□□□□ 0.15
COL9A1P20849 AL132780.4-201ENST00000624870 1135 ntBASIC15.96■□□□□ 0.15
COL9A1P20849 AC006453.1-201ENST00000636037 1257 ntBASIC15.96■□□□□ 0.15
COL9A1P20849 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC15.96■□□□□ 0.15
COL9A1P20849 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC15.96■□□□□ 0.15
COL9A1P20849 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
COL9A1P20849 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
COL9A1P20849 REXO1L1P-202ENST00000608646 1974 ntBASIC15.96■□□□□ 0.15
COL9A1P20849 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL9A1P20849 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL9A1P20849 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL9A1P20849 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL9A1P20849 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
COL9A1P20849 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
COL9A1P20849 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.14
COL9A1P20849 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
COL9A1P20849 ARRB2-218ENST00000575877 1579 ntTSL 5 BASIC15.96■□□□□ 0.14
COL9A1P20849 OR6D1P-202ENST00000641007 5290 ntBASIC15.96■□□□□ 0.14
COL9A1P20849 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL9A1P20849 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
COL9A1P20849 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL9A1P20849 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
COL9A1P20849 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL9A1P20849 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL9A1P20849 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL9A1P20849 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL9A1P20849 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
COL9A1P20849 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
COL9A1P20849 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
COL9A1P20849 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL9A1P20849 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL9A1P20849 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC15.95■□□□□ 0.14
COL9A1P20849 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL9A1P20849 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC15.95■□□□□ 0.14
COL9A1P20849 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL9A1P20849 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
COL9A1P20849 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC15.95■□□□□ 0.14
COL9A1P20849 NDUFA3-214ENST00000485876 963 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL9A1P20849 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL9A1P20849 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
COL9A1P20849 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC15.95■□□□□ 0.14
COL9A1P20849 AC023090.1-201ENST00000592906 502 ntTSL 3 BASIC15.95■□□□□ 0.14
COL9A1P20849 AC020922.3-201ENST00000595064 547 ntBASIC15.95■□□□□ 0.14
COL9A1P20849 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC15.95■□□□□ 0.14
COL9A1P20849 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL9A1P20849 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL9A1P20849 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC15.95■□□□□ 0.14
COL9A1P20849 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL9A1P20849 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL9A1P20849 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL9A1P20849 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
COL9A1P20849 AP001282.1-201ENST00000531301 1499 ntBASIC15.95■□□□□ 0.14
COL9A1P20849 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL9A1P20849 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms