Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC19.72■□□□□ 0.75
NPHP1O15259 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC19.72■□□□□ 0.75
NPHP1O15259 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP1O15259 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP1O15259 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
NPHP1O15259 MIR1247-201ENST00000408206 136 ntBASIC19.72■□□□□ 0.75
NPHP1O15259 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
NPHP1O15259 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC19.72■□□□□ 0.75
NPHP1O15259 GOLGA2P4-201ENST00000441462 777 ntBASIC19.72■□□□□ 0.75
NPHP1O15259 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC19.72■□□□□ 0.75
NPHP1O15259 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC19.72■□□□□ 0.75
NPHP1O15259 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC19.72■□□□□ 0.75
NPHP1O15259 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP1O15259 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP1O15259 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP1O15259 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP1O15259 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP1O15259 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP1O15259 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC19.72■□□□□ 0.75
NPHP1O15259 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP1O15259 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
NPHP1O15259 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP1O15259 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC19.72■□□□□ 0.75
NPHP1O15259 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP1O15259 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
NPHP1O15259 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP1O15259 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP1O15259 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP1O15259 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC19.71■□□□□ 0.75
NPHP1O15259 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP1O15259 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP1O15259 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP1O15259 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC19.71■□□□□ 0.75
NPHP1O15259 GPAA1P2-201ENST00000417923 928 ntBASIC19.71■□□□□ 0.75
NPHP1O15259 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC19.71■□□□□ 0.75
NPHP1O15259 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP1O15259 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC19.71■□□□□ 0.75
NPHP1O15259 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC19.71■□□□□ 0.75
NPHP1O15259 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
NPHP1O15259 GPX4-206ENST00000588919 803 ntTSL 2 BASIC19.71■□□□□ 0.75
NPHP1O15259 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP1O15259 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP1O15259 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
NPHP1O15259 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP1O15259 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP1O15259 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
NPHP1O15259 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP1O15259 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC19.71■□□□□ 0.75
NPHP1O15259 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC19.71■□□□□ 0.75
NPHP1O15259 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC19.71■□□□□ 0.75
NPHP1O15259 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP1O15259 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP1O15259 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC19.71■□□□□ 0.75
NPHP1O15259 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP1O15259 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC19.71■□□□□ 0.75
NPHP1O15259 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NPHP1O15259 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC19.7■□□□□ 0.74
NPHP1O15259 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NPHP1O15259 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC19.7■□□□□ 0.74
NPHP1O15259 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC19.7■□□□□ 0.74
NPHP1O15259 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
NPHP1O15259 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
NPHP1O15259 OLR1-203ENST00000432556 950 ntTSL 2 BASIC19.7■□□□□ 0.74
NPHP1O15259 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
NPHP1O15259 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC19.7■□□□□ 0.74
NPHP1O15259 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC19.7■□□□□ 0.74
NPHP1O15259 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC19.7■□□□□ 0.74
NPHP1O15259 AHRR-211ENST00000515206 462 ntTSL 5 BASIC19.7■□□□□ 0.74
NPHP1O15259 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
NPHP1O15259 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC19.7■□□□□ 0.74
NPHP1O15259 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC19.7■□□□□ 0.74
NPHP1O15259 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NPHP1O15259 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NPHP1O15259 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NPHP1O15259 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NPHP1O15259 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC19.7■□□□□ 0.74
NPHP1O15259 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
NPHP1O15259 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC19.7■□□□□ 0.74
NPHP1O15259 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC19.7■□□□□ 0.74
NPHP1O15259 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
NPHP1O15259 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
NPHP1O15259 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
NPHP1O15259 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NPHP1O15259 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
NPHP1O15259 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NPHP1O15259 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
NPHP1O15259 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NPHP1O15259 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
NPHP1O15259 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC19.69■□□□□ 0.74
NPHP1O15259 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC19.69■□□□□ 0.74
NPHP1O15259 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC19.69■□□□□ 0.74
NPHP1O15259 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
NPHP1O15259 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NPHP1O15259 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC19.69■□□□□ 0.74
NPHP1O15259 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
NPHP1O15259 BRF1-202ENST00000379932 884 ntTSL 5 BASIC19.69■□□□□ 0.74
NPHP1O15259 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC19.69■□□□□ 0.74
NPHP1O15259 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC19.69■□□□□ 0.74
NPHP1O15259 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC19.69■□□□□ 0.74
NPHP1O15259 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 63 ms