Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 NAA60-208ENST00000570819 833 ntTSL 2 BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 AC112693.3-201ENST00000624819 1983 ntBASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 MRPS18AP1-201ENST00000414458 589 ntBASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 PRR29-204ENST00000577953 565 ntTSL 4 BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 AC004840.1-201ENST00000636359 365 ntBASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 AC063926.3-201ENST00000624734 5658 ntBASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 AC104640.1-201ENST00000562617 2109 ntBASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 AC144831.1-201ENST00000573312 2656 ntBASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
ATG4BQ9Y4P1 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
ATG4BQ9Y4P1 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.03
ATG4BQ9Y4P1 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.03
ATG4BQ9Y4P1 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
ATG4BQ9Y4P1 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
ATG4BQ9Y4P1 BTBD7P1-201ENST00000447253 1453 ntBASIC14.83□□□□□ -0.03
ATG4BQ9Y4P1 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
ATG4BQ9Y4P1 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
ATG4BQ9Y4P1 AL596257.1-201ENST00000641463 2694 ntBASIC14.83□□□□□ -0.03
ATG4BQ9Y4P1 TSPY26P-202ENST00000565928 3884 ntBASIC14.83□□□□□ -0.03
ATG4BQ9Y4P1 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
ATG4BQ9Y4P1 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
ATG4BQ9Y4P1 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
ATG4BQ9Y4P1 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
ATG4BQ9Y4P1 C18orf15-201ENST00000623680 2534 ntBASIC14.83□□□□□ -0.04
ATG4BQ9Y4P1 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
ATG4BQ9Y4P1 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
ATG4BQ9Y4P1 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
ATG4BQ9Y4P1 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
ATG4BQ9Y4P1 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
ATG4BQ9Y4P1 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
ATG4BQ9Y4P1 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
ATG4BQ9Y4P1 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC14.83□□□□□ -0.04
ATG4BQ9Y4P1 STOM-203ENST00000538954 1257 ntTSL 5 BASIC14.83□□□□□ -0.04
ATG4BQ9Y4P1 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC14.83□□□□□ -0.04
ATG4BQ9Y4P1 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
ATG4BQ9Y4P1 MIR3197-201ENST00000582241 73 ntBASIC14.83□□□□□ -0.04
ATG4BQ9Y4P1 5S_rRNA.22-201ENST00000614916 106 ntBASIC14.83□□□□□ -0.04
ATG4BQ9Y4P1 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC14.83□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms