Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC15.46■□□□□ 0.07
MKS1Q9NXB0 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
MKS1Q9NXB0 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
MKS1Q9NXB0 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
MKS1Q9NXB0 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC15.46■□□□□ 0.07
MKS1Q9NXB0 AC104457.1-201ENST00000401024 814 ntBASIC15.46■□□□□ 0.07
MKS1Q9NXB0 FO393414.2-201ENST00000405153 598 ntBASIC15.46■□□□□ 0.07
MKS1Q9NXB0 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC15.46■□□□□ 0.07
MKS1Q9NXB0 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
MKS1Q9NXB0 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC15.46■□□□□ 0.07
MKS1Q9NXB0 HIST3H2BA-201ENST00000436555 524 ntBASIC15.46■□□□□ 0.07
MKS1Q9NXB0 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC15.46■□□□□ 0.07
MKS1Q9NXB0 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
MKS1Q9NXB0 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
MKS1Q9NXB0 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
MKS1Q9NXB0 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC15.46■□□□□ 0.07
MKS1Q9NXB0 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
MKS1Q9NXB0 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC15.46■□□□□ 0.07
MKS1Q9NXB0 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC15.46■□□□□ 0.07
MKS1Q9NXB0 AL645728.2-202ENST00000641679 227 ntBASIC15.46■□□□□ 0.07
MKS1Q9NXB0 AC092902.6-201ENST00000641783 218 ntBASIC15.46■□□□□ 0.07
MKS1Q9NXB0 AC092865.6-201ENST00000642101 219 ntBASIC15.46■□□□□ 0.07
MKS1Q9NXB0 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
MKS1Q9NXB0 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
MKS1Q9NXB0 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC15.46■□□□□ 0.07
MKS1Q9NXB0 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
MKS1Q9NXB0 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
MKS1Q9NXB0 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
MKS1Q9NXB0 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC15.46■□□□□ 0.07
MKS1Q9NXB0 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
MKS1Q9NXB0 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC15.46■□□□□ 0.06
MKS1Q9NXB0 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
MKS1Q9NXB0 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.06
MKS1Q9NXB0 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.06
MKS1Q9NXB0 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
MKS1Q9NXB0 USP31-203ENST00000567975 2142 ntTSL 2 BASIC15.46■□□□□ 0.06
MKS1Q9NXB0 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.06
MKS1Q9NXB0 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC15.46■□□□□ 0.06
MKS1Q9NXB0 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC15.46■□□□□ 0.06
MKS1Q9NXB0 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC15.46■□□□□ 0.06
MKS1Q9NXB0 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 HSPA7-201ENST00000445535 1927 ntBASIC15.45■□□□□ 0.06
MKS1Q9NXB0 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
MKS1Q9NXB0 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
MKS1Q9NXB0 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC15.44■□□□□ 0.06
MKS1Q9NXB0 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC15.44■□□□□ 0.06
MKS1Q9NXB0 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
MKS1Q9NXB0 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
MKS1Q9NXB0 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
MKS1Q9NXB0 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
MKS1Q9NXB0 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
MKS1Q9NXB0 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
MKS1Q9NXB0 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
MKS1Q9NXB0 SPDYE17-201ENST00000412399 783 ntBASIC15.44■□□□□ 0.06
MKS1Q9NXB0 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC15.44■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 79.6 ms