Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 ELL2P1-201ENST00000413990 1906 ntBASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 FXR1-221ENST00000491674 365 ntTSL 2 BASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 ALG1L8P-201ENST00000533887 760 ntBASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 AC105021.1-202ENST00000570572 669 ntBASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 AC105339.1-204ENST00000636249 355 ntBASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 CICP11-201ENST00000434745 2827 ntBASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC16.27■□□□□ 0.2
ATG4AQ8WYN0 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
ATG4AQ8WYN0 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
ATG4AQ8WYN0 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC16.27■□□□□ 0.2
ATG4AQ8WYN0 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
ATG4AQ8WYN0 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
ATG4AQ8WYN0 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
ATG4AQ8WYN0 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC16.27■□□□□ 0.2
ATG4AQ8WYN0 AJ011931.1-201ENST00000618749 2492 ntBASIC16.27■□□□□ 0.2
ATG4AQ8WYN0 FAM45BP-202ENST00000592932 1624 ntBASIC16.27■□□□□ 0.2
ATG4AQ8WYN0 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
ATG4AQ8WYN0 LINC01101-201ENST00000622953 1884 ntBASIC16.27■□□□□ 0.2
ATG4AQ8WYN0 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC16.27■□□□□ 0.2
ATG4AQ8WYN0 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ATG4AQ8WYN0 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
ATG4AQ8WYN0 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC16.27■□□□□ 0.2
ATG4AQ8WYN0 LINC00552-201ENST00000625151 2579 ntBASIC16.27■□□□□ 0.2
ATG4AQ8WYN0 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
ATG4AQ8WYN0 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ATG4AQ8WYN0 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC16.27■□□□□ 0.2
ATG4AQ8WYN0 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
ATG4AQ8WYN0 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC16.27■□□□□ 0.2
ATG4AQ8WYN0 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ATG4AQ8WYN0 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ATG4AQ8WYN0 AC005237.2-201ENST00000434368 219 ntBASIC16.27■□□□□ 0.2
ATG4AQ8WYN0 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC16.27■□□□□ 0.2
ATG4AQ8WYN0 CEND1P1-201ENST00000451006 455 ntBASIC16.27■□□□□ 0.2
ATG4AQ8WYN0 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC16.27■□□□□ 0.2
ATG4AQ8WYN0 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC16.27■□□□□ 0.2
ATG4AQ8WYN0 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ATG4AQ8WYN0 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC16.27■□□□□ 0.2
ATG4AQ8WYN0 AC093520.2-201ENST00000561830 333 ntBASIC16.27■□□□□ 0.2
ATG4AQ8WYN0 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC16.27■□□□□ 0.2
ATG4AQ8WYN0 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC16.27■□□□□ 0.2
ATG4AQ8WYN0 MTDHP5-201ENST00000598980 586 ntBASIC16.27■□□□□ 0.2
ATG4AQ8WYN0 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC16.27■□□□□ 0.2
ATG4AQ8WYN0 AC055717.3-201ENST00000622967 595 ntBASIC16.27■□□□□ 0.2
ATG4AQ8WYN0 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
ATG4AQ8WYN0 AC013726.1-201ENST00000563747 2285 ntBASIC16.27■□□□□ 0.2
ATG4AQ8WYN0 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC16.27■□□□□ 0.19
ATG4AQ8WYN0 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC16.27■□□□□ 0.19
ATG4AQ8WYN0 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
ATG4AQ8WYN0 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
ATG4AQ8WYN0 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
ATG4AQ8WYN0 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
ATG4AQ8WYN0 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
ATG4AQ8WYN0 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
ATG4AQ8WYN0 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
ATG4AQ8WYN0 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
ATG4AQ8WYN0 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
ATG4AQ8WYN0 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
ATG4AQ8WYN0 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
ATG4AQ8WYN0 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.19
ATG4AQ8WYN0 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
ATG4AQ8WYN0 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
ATG4AQ8WYN0 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
ATG4AQ8WYN0 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ATG4AQ8WYN0 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ATG4AQ8WYN0 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms