Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AL589987.1-201ENST00000453380 819 ntBASIC4.89□□□□□ -1.63
SYNE1Q8NF91 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 PARN-203ENST00000437198 3078 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 MOCS1-204ENST00000373188 3358 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 AL513480.1-201ENST00000451731 511 ntBASIC4.89□□□□□ -1.63
SYNE1Q8NF91 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 SGMS1-202ENST00000361781 3744 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 ATXN2L-225ENST00000570200 3635 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 TTC39B-201ENST00000297615 3053 ntAPPRIS ALT2 TSL 2 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 USP32P1-208ENST00000506594 1164 ntBASIC4.89□□□□□ -1.63
SYNE1Q8NF91 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 SIGLEC29P-201ENST00000599873 1114 ntBASIC4.89□□□□□ -1.63
SYNE1Q8NF91 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 KCNAB2-206ENST00000378097 4201 ntAPPRIS P4 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 ZMYND11-203ENST00000381591 4229 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 CENPM-206ENST00000407253 818 ntTSL 2 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 AC022210.1-201ENST00000449856 793 ntBASIC4.88□□□□□ -1.63
SYNE1Q8NF91 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 ABCB8-202ENST00000358849 4683 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 FOXM1-210ENST00000627656 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 PPP1R3D-201ENST00000370996 3630 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 AC099568.2-201ENST00000609194 695 ntBASIC4.88□□□□□ -1.63
SYNE1Q8NF91 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms