Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
HTTP42858 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HTTP42858 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
HTTP42858 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HTTP42858 REXO1L5P-201ENST00000622260 2098 ntBASIC17.15■□□□□ 0.34
HTTP42858 HNRNPA1P41-201ENST00000397777 928 ntBASIC17.15■□□□□ 0.34
HTTP42858 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC17.15■□□□□ 0.34
HTTP42858 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HTTP42858 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC17.15■□□□□ 0.34
HTTP42858 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HTTP42858 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HTTP42858 KRT8P21-201ENST00000430398 1491 ntBASIC17.15■□□□□ 0.34
HTTP42858 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HTTP42858 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HTTP42858 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
HTTP42858 RN7SKP175-201ENST00000408472 289 ntBASIC17.15■□□□□ 0.34
HTTP42858 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC17.15■□□□□ 0.34
HTTP42858 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC17.15■□□□□ 0.34
HTTP42858 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC17.15■□□□□ 0.34
HTTP42858 AC004466.1-201ENST00000599515 1080 ntBASIC17.15■□□□□ 0.34
HTTP42858 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HTTP42858 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC17.15■□□□□ 0.34
HTTP42858 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC17.15■□□□□ 0.34
HTTP42858 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
HTTP42858 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC17.15■□□□□ 0.34
HTTP42858 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC17.15■□□□□ 0.34
HTTP42858 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC17.15■□□□□ 0.34
HTTP42858 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.34
HTTP42858 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
HTTP42858 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
HTTP42858 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.34
HTTP42858 RN7SL163P-201ENST00000583100 276 ntBASIC17.14■□□□□ 0.34
HTTP42858 Z98259.2-201ENST00000641583 609 ntBASIC17.14■□□□□ 0.34
HTTP42858 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC17.14■□□□□ 0.34
HTTP42858 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
HTTP42858 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
HTTP42858 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HTTP42858 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HTTP42858 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC17.14■□□□□ 0.33
HTTP42858 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
HTTP42858 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC17.14■□□□□ 0.33
HTTP42858 AL645937.2-201ENST00000396808 931 ntBASIC17.14■□□□□ 0.33
HTTP42858 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC17.14■□□□□ 0.33
HTTP42858 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC17.14■□□□□ 0.33
HTTP42858 ANAPC15-217ENST00000545944 704 ntAPPRIS P3 TSL 3 BASIC17.14■□□□□ 0.33
HTTP42858 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC17.14■□□□□ 0.33
HTTP42858 HKR1-225ENST00000592168 566 ntTSL 4 BASIC17.14■□□□□ 0.33
HTTP42858 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC17.14■□□□□ 0.33
HTTP42858 AL157813.1-201ENST00000612996 587 ntBASIC17.14■□□□□ 0.33
HTTP42858 FO393412.1-201ENST00000619841 382 ntBASIC17.14■□□□□ 0.33
HTTP42858 AC244250.3-201ENST00000620749 366 ntBASIC17.14■□□□□ 0.33
HTTP42858 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HTTP42858 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HTTP42858 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.14■□□□□ 0.33
HTTP42858 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HTTP42858 AC020916.1-201ENST00000587762 1774 ntBASIC17.14■□□□□ 0.33
HTTP42858 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
HTTP42858 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HTTP42858 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC17.14■□□□□ 0.33
HTTP42858 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
HTTP42858 HPGD-203ENST00000422112 805 ntTSL 2 BASIC17.14■□□□□ 0.33
HTTP42858 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC17.14■□□□□ 0.33
HTTP42858 PAM16-211ENST00000575848 518 ntTSL 3 BASIC17.14■□□□□ 0.33
HTTP42858 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
HTTP42858 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC17.14■□□□□ 0.33
HTTP42858 AC055811.4-201ENST00000624039 1754 ntBASIC17.14■□□□□ 0.33
HTTP42858 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HTTP42858 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC17.14■□□□□ 0.33
HTTP42858 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HTTP42858 AC013726.1-201ENST00000563747 2285 ntBASIC17.13■□□□□ 0.33
HTTP42858 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HTTP42858 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HTTP42858 LSM5-207ENST00000410044 687 ntTSL 3 BASIC17.13■□□□□ 0.33
HTTP42858 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
HTTP42858 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC17.13■□□□□ 0.33
HTTP42858 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC17.13■□□□□ 0.33
HTTP42858 AC005041.3-201ENST00000606287 649 ntBASIC17.13■□□□□ 0.33
HTTP42858 CMC2-224ENST00000630396 481 ntTSL 5 BASIC17.13■□□□□ 0.33
HTTP42858 AGGF1P2-201ENST00000426656 2106 ntBASIC17.13■□□□□ 0.33
HTTP42858 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC17.13■□□□□ 0.33
HTTP42858 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HTTP42858 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC17.13■□□□□ 0.33
HTTP42858 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC17.13■□□□□ 0.33
HTTP42858 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HTTP42858 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HTTP42858 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
HTTP42858 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
HTTP42858 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HTTP42858 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
HTTP42858 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC17.13■□□□□ 0.33
HTTP42858 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
HTTP42858 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC17.13■□□□□ 0.33
HTTP42858 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC17.13■□□□□ 0.33
HTTP42858 C2orf69P1-201ENST00000563532 1093 ntBASIC17.13■□□□□ 0.33
HTTP42858 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HTTP42858 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HTTP42858 MFF-204ENST00000353339 2186 ntTSL 5 BASIC17.13■□□□□ 0.33
HTTP42858 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HTTP42858 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HTTP42858 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms