Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
COL8A1P27658 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC13.68□□□□□ -0.22
COL8A1P27658 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
COL8A1P27658 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
COL8A1P27658 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL8A1P27658 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL8A1P27658 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL8A1P27658 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL8A1P27658 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL8A1P27658 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC13.67□□□□□ -0.22
COL8A1P27658 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL8A1P27658 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
COL8A1P27658 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC13.67□□□□□ -0.22
COL8A1P27658 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL8A1P27658 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL8A1P27658 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL8A1P27658 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
COL8A1P27658 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
COL8A1P27658 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
COL8A1P27658 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL8A1P27658 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
COL8A1P27658 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL8A1P27658 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
COL8A1P27658 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL8A1P27658 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC13.67□□□□□ -0.22
COL8A1P27658 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC13.67□□□□□ -0.22
COL8A1P27658 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL8A1P27658 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL8A1P27658 SDCCAG3P2-201ENST00000326105 1023 ntBASIC13.67□□□□□ -0.22
COL8A1P27658 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC13.67□□□□□ -0.22
COL8A1P27658 BRF1-202ENST00000379932 884 ntTSL 5 BASIC13.67□□□□□ -0.22
COL8A1P27658 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
COL8A1P27658 TOMM22P5-201ENST00000416399 439 ntBASIC13.67□□□□□ -0.22
COL8A1P27658 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL8A1P27658 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC13.67□□□□□ -0.22
COL8A1P27658 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC13.67□□□□□ -0.22
COL8A1P27658 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC13.67□□□□□ -0.22
COL8A1P27658 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC13.67□□□□□ -0.22
COL8A1P27658 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC13.67□□□□□ -0.22
COL8A1P27658 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC13.67□□□□□ -0.22
COL8A1P27658 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC13.67□□□□□ -0.22
COL8A1P27658 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC13.67□□□□□ -0.22
COL8A1P27658 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL8A1P27658 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC13.67□□□□□ -0.22
COL8A1P27658 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC13.67□□□□□ -0.22
COL8A1P27658 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
COL8A1P27658 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
COL8A1P27658 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
COL8A1P27658 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC13.67□□□□□ -0.22
COL8A1P27658 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL8A1P27658 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
COL8A1P27658 AL391256.1-201ENST00000443260 1855 ntBASIC13.67□□□□□ -0.22
COL8A1P27658 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
COL8A1P27658 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
COL8A1P27658 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL8A1P27658 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
COL8A1P27658 LINC02012-201ENST00000608206 1725 ntBASIC13.67□□□□□ -0.22
COL8A1P27658 AC005622.1-201ENST00000636801 1703 ntBASIC13.67□□□□□ -0.22
COL8A1P27658 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
COL8A1P27658 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC13.67□□□□□ -0.22
COL8A1P27658 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
COL8A1P27658 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL8A1P27658 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
COL8A1P27658 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC13.66□□□□□ -0.22
COL8A1P27658 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC13.66□□□□□ -0.22
COL8A1P27658 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL8A1P27658 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC13.66□□□□□ -0.22
COL8A1P27658 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL8A1P27658 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC13.66□□□□□ -0.22
COL8A1P27658 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL8A1P27658 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL8A1P27658 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL8A1P27658 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL8A1P27658 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC13.66□□□□□ -0.22
COL8A1P27658 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
COL8A1P27658 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
COL8A1P27658 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL8A1P27658 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL8A1P27658 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC13.66□□□□□ -0.22
COL8A1P27658 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL8A1P27658 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC13.66□□□□□ -0.22
COL8A1P27658 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL8A1P27658 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL8A1P27658 ACKR1-201ENST00000368121 1240 ntBASIC13.66□□□□□ -0.22
COL8A1P27658 UFM1-202ENST00000379649 846 ntTSL 4 BASIC13.66□□□□□ -0.22
COL8A1P27658 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
COL8A1P27658 MPV17-205ENST00000402310 906 ntTSL 5 BASIC13.66□□□□□ -0.22
COL8A1P27658 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL8A1P27658 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL8A1P27658 POM121L10P-201ENST00000436994 1285 ntBASIC13.66□□□□□ -0.22
COL8A1P27658 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC13.66□□□□□ -0.22
COL8A1P27658 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL8A1P27658 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC13.66□□□□□ -0.22
COL8A1P27658 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC13.66□□□□□ -0.22
COL8A1P27658 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC13.66□□□□□ -0.22
COL8A1P27658 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
COL8A1P27658 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC13.66□□□□□ -0.22
COL8A1P27658 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC13.66□□□□□ -0.22
COL8A1P27658 GPX4-206ENST00000588919 803 ntTSL 2 BASIC13.66□□□□□ -0.22
COL8A1P27658 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC13.66□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms