Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VCANP13611 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
VCANP13611 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VCANP13611 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
VCANP13611 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VCANP13611 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC15.84■□□□□ 0.13
VCANP13611 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC15.84■□□□□ 0.13
VCANP13611 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VCANP13611 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VCANP13611 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
VCANP13611 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VCANP13611 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VCANP13611 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC15.84■□□□□ 0.13
VCANP13611 AC015712.5-201ENST00000558568 564 ntTSL 2 BASIC15.84■□□□□ 0.13
VCANP13611 TPM1-223ENST00000560445 485 ntTSL 3 BASIC15.84■□□□□ 0.13
VCANP13611 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
VCANP13611 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
VCANP13611 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
VCANP13611 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
VCANP13611 FUK-207ENST00000571514 3054 ntTSL 2 BASIC15.84■□□□□ 0.13
VCANP13611 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VCANP13611 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
VCANP13611 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC15.84■□□□□ 0.13
VCANP13611 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC15.84■□□□□ 0.13
VCANP13611 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VCANP13611 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VCANP13611 BCAS2P2-201ENST00000425064 674 ntBASIC15.84■□□□□ 0.13
VCANP13611 AL627422.1-201ENST00000434104 580 ntBASIC15.84■□□□□ 0.13
VCANP13611 AL645933.1-201ENST00000440087 609 ntBASIC15.84■□□□□ 0.13
VCANP13611 AC244197.1-201ENST00000456494 951 ntBASIC15.84■□□□□ 0.13
VCANP13611 AC142086.5-202ENST00000562500 217 ntBASIC15.84■□□□□ 0.13
VCANP13611 ZNF175-204ENST00000596504 580 ntTSL 2 BASIC15.84■□□□□ 0.13
VCANP13611 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC15.84■□□□□ 0.13
VCANP13611 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC15.84■□□□□ 0.13
VCANP13611 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC15.84■□□□□ 0.13
VCANP13611 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC15.84■□□□□ 0.13
VCANP13611 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
VCANP13611 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VCANP13611 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VCANP13611 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC15.84■□□□□ 0.13
VCANP13611 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC15.84■□□□□ 0.13
VCANP13611 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC15.84■□□□□ 0.13
VCANP13611 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
VCANP13611 IFI27L1-212ENST00000557218 413 ntTSL 3 BASIC15.84■□□□□ 0.13
VCANP13611 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC15.84■□□□□ 0.13
VCANP13611 AC092073.1-202ENST00000606020 653 ntTSL 3 BASIC15.84■□□□□ 0.13
VCANP13611 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
VCANP13611 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC15.83■□□□□ 0.13
VCANP13611 PCGF3-213ENST00000620529 1899 ntBASIC15.83■□□□□ 0.13
VCANP13611 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC15.83■□□□□ 0.13
VCANP13611 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.13
VCANP13611 CCL25-202ENST00000315626 450 ntTSL 2 BASIC15.83■□□□□ 0.13
VCANP13611 KRT17P5-201ENST00000332088 839 ntBASIC15.83■□□□□ 0.13
VCANP13611 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.13
VCANP13611 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
VCANP13611 TRBV5-7-201ENST00000390378 343 ntAPPRIS P1 BASIC15.83■□□□□ 0.13
VCANP13611 MACROD2-204ENST00000407045 727 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
VCANP13611 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC15.83■□□□□ 0.13
VCANP13611 BCL2L12P1-201ENST00000508390 733 ntBASIC15.83■□□□□ 0.13
VCANP13611 AC007656.1-201ENST00000552238 573 ntTSL 4 BASIC15.83■□□□□ 0.13
VCANP13611 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC15.83■□□□□ 0.13
VCANP13611 MIR4783-201ENST00000580343 82 ntBASIC15.83■□□□□ 0.13
VCANP13611 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.13
VCANP13611 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
VCANP13611 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC15.83■□□□□ 0.13
VCANP13611 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC15.83■□□□□ 0.13
VCANP13611 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
VCANP13611 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
VCANP13611 STAG1-206ENST00000480733 1304 ntTSL 2 BASIC15.83■□□□□ 0.12
VCANP13611 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC15.83■□□□□ 0.12
VCANP13611 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VCANP13611 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VCANP13611 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC15.83■□□□□ 0.12
VCANP13611 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VCANP13611 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
VCANP13611 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
VCANP13611 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
VCANP13611 FAM8A4P-201ENST00000435433 1213 ntBASIC15.83■□□□□ 0.12
VCANP13611 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC15.83■□□□□ 0.12
VCANP13611 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC15.83■□□□□ 0.12
VCANP13611 AC008723.1-201ENST00000506922 207 ntBASIC15.83■□□□□ 0.12
VCANP13611 GDNF-207ENST00000515058 764 ntTSL 5 BASIC15.83■□□□□ 0.12
VCANP13611 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC15.83■□□□□ 0.12
VCANP13611 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VCANP13611 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
VCANP13611 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VCANP13611 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
VCANP13611 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC15.83■□□□□ 0.12
VCANP13611 COX8A-201ENST00000314133 507 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VCANP13611 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
VCANP13611 AL136309.1-201ENST00000403917 691 ntBASIC15.83■□□□□ 0.12
VCANP13611 CHMP1AP1-201ENST00000445563 662 ntBASIC15.83■□□□□ 0.12
VCANP13611 AC010900.1-201ENST00000449849 1296 ntBASIC15.83■□□□□ 0.12
VCANP13611 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC15.83■□□□□ 0.12
VCANP13611 AL078590.3-205ENST00000606039 465 ntTSL 5 BASIC15.83■□□□□ 0.12
VCANP13611 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VCANP13611 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
VCANP13611 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC15.82■□□□□ 0.12
VCANP13611 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC15.82■□□□□ 0.12
VCANP13611 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms