Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CTDNEP1O95476 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
CTDNEP1O95476 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CTDNEP1O95476 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CTDNEP1O95476 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC18.09■□□□□ 0.49
CTDNEP1O95476 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
CTDNEP1O95476 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC18.09■□□□□ 0.49
CTDNEP1O95476 GHSR-202ENST00000427970 912 ntBASIC18.09■□□□□ 0.49
CTDNEP1O95476 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC18.09■□□□□ 0.49
CTDNEP1O95476 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC18.09■□□□□ 0.49
CTDNEP1O95476 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC18.09■□□□□ 0.49
CTDNEP1O95476 GPALPP1-207ENST00000611650 899 ntBASIC18.09■□□□□ 0.49
CTDNEP1O95476 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC18.09■□□□□ 0.49
CTDNEP1O95476 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC18.09■□□□□ 0.49
CTDNEP1O95476 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CTDNEP1O95476 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CTDNEP1O95476 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CTDNEP1O95476 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CTDNEP1O95476 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
CTDNEP1O95476 ZBED1P1-201ENST00000502364 1930 ntBASIC18.09■□□□□ 0.49
CTDNEP1O95476 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CTDNEP1O95476 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
CTDNEP1O95476 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC18.09■□□□□ 0.49
CTDNEP1O95476 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC18.09■□□□□ 0.49
CTDNEP1O95476 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
CTDNEP1O95476 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
CTDNEP1O95476 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CTDNEP1O95476 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.49
CTDNEP1O95476 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CTDNEP1O95476 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
CTDNEP1O95476 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CTDNEP1O95476 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
CTDNEP1O95476 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC18.08■□□□□ 0.49
CTDNEP1O95476 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CTDNEP1O95476 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CTDNEP1O95476 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CTDNEP1O95476 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CTDNEP1O95476 AJ011931.1-201ENST00000618749 2492 ntBASIC18.08■□□□□ 0.49
CTDNEP1O95476 CROCCP1-201ENST00000426910 5675 ntBASIC18.08■□□□□ 0.49
CTDNEP1O95476 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CTDNEP1O95476 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
CTDNEP1O95476 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CTDNEP1O95476 AL359258.3-201ENST00000622910 2331 ntBASIC18.08■□□□□ 0.48
CTDNEP1O95476 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CTDNEP1O95476 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CTDNEP1O95476 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
CTDNEP1O95476 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
CTDNEP1O95476 GGCT-205ENST00000409436 954 ntTSL 3 BASIC18.08■□□□□ 0.48
CTDNEP1O95476 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC18.08■□□□□ 0.48
CTDNEP1O95476 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CTDNEP1O95476 KRT18P43-201ENST00000469825 1281 ntBASIC18.08■□□□□ 0.48
CTDNEP1O95476 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CTDNEP1O95476 AC000095.1-201ENST00000603208 874 ntBASIC18.08■□□□□ 0.48
CTDNEP1O95476 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CTDNEP1O95476 AL158212.4-201ENST00000624062 1286 ntBASIC18.08■□□□□ 0.48
CTDNEP1O95476 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CTDNEP1O95476 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC18.08■□□□□ 0.48
CTDNEP1O95476 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
CTDNEP1O95476 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CTDNEP1O95476 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC18.08■□□□□ 0.48
CTDNEP1O95476 REXO1L2P-201ENST00000425429 2069 ntBASIC18.08■□□□□ 0.48
CTDNEP1O95476 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CTDNEP1O95476 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
CTDNEP1O95476 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CTDNEP1O95476 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CTDNEP1O95476 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
CTDNEP1O95476 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CTDNEP1O95476 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CTDNEP1O95476 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CTDNEP1O95476 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CTDNEP1O95476 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
CTDNEP1O95476 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
CTDNEP1O95476 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CTDNEP1O95476 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CTDNEP1O95476 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CTDNEP1O95476 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CTDNEP1O95476 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC18.07■□□□□ 0.48
CTDNEP1O95476 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CTDNEP1O95476 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CTDNEP1O95476 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CTDNEP1O95476 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC18.07■□□□□ 0.48
CTDNEP1O95476 FAM8A3P-201ENST00000427218 844 ntBASIC18.07■□□□□ 0.48
CTDNEP1O95476 RASL12-203ENST00000434605 982 ntTSL 2 BASIC18.07■□□□□ 0.48
CTDNEP1O95476 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC18.07■□□□□ 0.48
CTDNEP1O95476 RFPL4AP1-201ENST00000530883 850 ntBASIC18.07■□□□□ 0.48
CTDNEP1O95476 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CTDNEP1O95476 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC18.07■□□□□ 0.48
CTDNEP1O95476 PRR29-204ENST00000577953 565 ntTSL 4 BASIC18.07■□□□□ 0.48
CTDNEP1O95476 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CTDNEP1O95476 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CTDNEP1O95476 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CTDNEP1O95476 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CTDNEP1O95476 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC18.07■□□□□ 0.48
CTDNEP1O95476 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CTDNEP1O95476 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CTDNEP1O95476 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CTDNEP1O95476 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CTDNEP1O95476 CICP23-201ENST00000605013 2741 ntBASIC18.07■□□□□ 0.48
CTDNEP1O95476 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CTDNEP1O95476 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 65.1 ms