Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VPS9D1Q9Y2B5 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
VPS9D1Q9Y2B5 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 PPT1-215ENST00000641471 2368 ntBASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 AL607033.1-201ENST00000623900 1599 ntBASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 RPL5P21-201ENST00000404620 815 ntBASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 AC067863.1-201ENST00000494933 530 ntBASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 AC015911.4-201ENST00000588022 1070 ntBASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 AC022079.1-201ENST00000621546 602 ntBASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 AC073347.1-201ENST00000421633 2643 ntBASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 AC103702.1-201ENST00000548801 2630 ntBASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS9D1Q9Y2B5 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 FO538757.1-201ENST00000623083 1397 ntBASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 AL080243.2-201ENST00000418783 582 ntBASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 VPS29-207ENST00000549970 818 ntTSL 3 BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 CMC2-214ENST00000565925 640 ntTSL 5 BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 GRN-214ENST00000589265 1632 ntTSL 5 BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS9D1Q9Y2B5 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms