Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC14.83□□□□□ -0.04
PTCHD1Q96NR3 MYB-242ENST00000618728 3545 ntTSL 5 BASIC14.83□□□□□ -0.04
PTCHD1Q96NR3 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PTCHD1Q96NR3 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PTCHD1Q96NR3 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC14.83□□□□□ -0.04
PTCHD1Q96NR3 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
PTCHD1Q96NR3 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
PTCHD1Q96NR3 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PTCHD1Q96NR3 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 RPL13P2-201ENST00000440687 659 ntBASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 CD81-207ENST00000481687 890 ntTSL 2 BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 ARL16-202ENST00000570561 768 ntTSL 2 BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 AL132655.2-201ENST00000596276 594 ntBASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 HLA-DQB2-231ENST00000435145 2026 ntBASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PTCHD1Q96NR3 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 AC015922.1-201ENST00000421102 1152 ntBASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 MEP1AP4-201ENST00000423244 1087 ntBASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 KRT18P64-201ENST00000434946 1219 ntBASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 AC093004.1-201ENST00000508850 424 ntBASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 SLED1-202ENST00000512051 380 ntBASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 FTH1-202ENST00000526640 786 ntTSL 2 BASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 CDK4-206ENST00000549606 558 ntTSL 2 BASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 AC004790.1-201ENST00000612686 536 ntBASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms