Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 AC005702.4-201ENST00000618393 416 ntBASIC18.51■□□□□ 0.55
SYNE3Q6ZMZ3 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
SYNE3Q6ZMZ3 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SYNE3Q6ZMZ3 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SYNE3Q6ZMZ3 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SYNE3Q6ZMZ3 FES-204ENST00000414248 2327 ntTSL 2 BASIC18.51■□□□□ 0.55
SYNE3Q6ZMZ3 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SYNE3Q6ZMZ3 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SYNE3Q6ZMZ3 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
SYNE3Q6ZMZ3 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC18.51■□□□□ 0.55
SYNE3Q6ZMZ3 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
SYNE3Q6ZMZ3 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC18.51■□□□□ 0.55
SYNE3Q6ZMZ3 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 AC011270.2-201ENST00000624293 2550 ntBASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 Z97205.2-201ENST00000564697 1639 ntBASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 AC027796.2-201ENST00000575326 344 ntBASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 AL109936.8-201ENST00000641772 604 ntBASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC18.5■□□□□ 0.55
SYNE3Q6ZMZ3 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 RNA5SP421-201ENST00000516864 134 ntBASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 AL844908.2-201ENST00000609461 460 ntBASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 AC074044.1-201ENST00000609673 707 ntBASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 AC092850.2-201ENST00000623821 2697 ntBASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 56.8 ms