Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC16.95■□□□□ 0.3
KRT39Q6A163 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
KRT39Q6A163 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
KRT39Q6A163 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
KRT39Q6A163 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
KRT39Q6A163 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
KRT39Q6A163 C18orf15-201ENST00000623680 2534 ntBASIC16.95■□□□□ 0.3
KRT39Q6A163 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
KRT39Q6A163 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
KRT39Q6A163 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC16.94■□□□□ 0.3
KRT39Q6A163 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC16.94■□□□□ 0.3
KRT39Q6A163 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC16.94■□□□□ 0.3
KRT39Q6A163 TK1-203ENST00000588734 1681 ntTSL 2 BASIC16.94■□□□□ 0.3
KRT39Q6A163 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC16.94■□□□□ 0.3
KRT39Q6A163 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
KRT39Q6A163 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
KRT39Q6A163 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
KRT39Q6A163 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
KRT39Q6A163 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC16.94■□□□□ 0.3
KRT39Q6A163 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
KRT39Q6A163 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
KRT39Q6A163 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
KRT39Q6A163 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
KRT39Q6A163 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
KRT39Q6A163 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC16.94■□□□□ 0.3
KRT39Q6A163 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC16.94■□□□□ 0.3
KRT39Q6A163 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC16.94■□□□□ 0.3
KRT39Q6A163 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC16.94■□□□□ 0.3
KRT39Q6A163 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
KRT39Q6A163 TIMM17BP1-201ENST00000545713 516 ntBASIC16.94■□□□□ 0.3
KRT39Q6A163 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC16.94■□□□□ 0.3
KRT39Q6A163 AC092337.1-201ENST00000568699 1129 ntBASIC16.94■□□□□ 0.3
KRT39Q6A163 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
KRT39Q6A163 AC015910.1-201ENST00000579400 975 ntBASIC16.94■□□□□ 0.3
KRT39Q6A163 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC16.94■□□□□ 0.3
KRT39Q6A163 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
KRT39Q6A163 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
KRT39Q6A163 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC16.94■□□□□ 0.3
KRT39Q6A163 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
KRT39Q6A163 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
KRT39Q6A163 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC16.94■□□□□ 0.3
KRT39Q6A163 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
KRT39Q6A163 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
KRT39Q6A163 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
KRT39Q6A163 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
KRT39Q6A163 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC16.94■□□□□ 0.3
KRT39Q6A163 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
KRT39Q6A163 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
KRT39Q6A163 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
KRT39Q6A163 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
KRT39Q6A163 AC084364.1-201ENST00000551967 1556 ntBASIC16.94■□□□□ 0.3
KRT39Q6A163 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
KRT39Q6A163 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC16.93■□□□□ 0.3
KRT39Q6A163 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
KRT39Q6A163 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
KRT39Q6A163 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
KRT39Q6A163 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
KRT39Q6A163 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
KRT39Q6A163 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
KRT39Q6A163 AL133267.1-201ENST00000398220 340 ntBASIC16.93■□□□□ 0.3
KRT39Q6A163 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
KRT39Q6A163 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC16.93■□□□□ 0.3
KRT39Q6A163 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
KRT39Q6A163 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC16.93■□□□□ 0.3
KRT39Q6A163 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC16.93■□□□□ 0.3
KRT39Q6A163 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
KRT39Q6A163 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
KRT39Q6A163 AQP6-203ENST00000551733 849 ntTSL 3 BASIC16.93■□□□□ 0.3
KRT39Q6A163 AC027796.2-201ENST00000575326 344 ntBASIC16.93■□□□□ 0.3
KRT39Q6A163 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC16.93■□□□□ 0.3
KRT39Q6A163 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
KRT39Q6A163 AC008738.7-201ENST00000609744 511 ntBASIC16.93■□□□□ 0.3
KRT39Q6A163 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC16.93■□□□□ 0.3
KRT39Q6A163 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
KRT39Q6A163 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
KRT39Q6A163 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
KRT39Q6A163 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC16.93■□□□□ 0.3
KRT39Q6A163 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
KRT39Q6A163 AL109954.1-202ENST00000564051 2148 ntBASIC16.93■□□□□ 0.3
KRT39Q6A163 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
KRT39Q6A163 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC16.93■□□□□ 0.3
KRT39Q6A163 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC16.93■□□□□ 0.3
KRT39Q6A163 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
KRT39Q6A163 AC138969.3-201ENST00000546612 1459 ntBASIC16.93■□□□□ 0.3
KRT39Q6A163 AC138932.2-201ENST00000548268 1459 ntBASIC16.93■□□□□ 0.3
KRT39Q6A163 AC126755.4-201ENST00000549796 1459 ntBASIC16.93■□□□□ 0.3
KRT39Q6A163 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
KRT39Q6A163 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
KRT39Q6A163 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
KRT39Q6A163 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC16.92■□□□□ 0.3
KRT39Q6A163 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC16.92■□□□□ 0.3
KRT39Q6A163 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC16.92■□□□□ 0.3
KRT39Q6A163 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
KRT39Q6A163 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
KRT39Q6A163 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
KRT39Q6A163 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
KRT39Q6A163 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
KRT39Q6A163 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.92■□□□□ 0.3
KRT39Q6A163 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
KRT39Q6A163 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms