Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC093520.2-201ENST00000561830 333 ntBASIC16.62■□□□□ 0.25
LIG3P49916 AL139011.1-202ENST00000642063 584 ntBASIC16.62■□□□□ 0.25
LIG3P49916 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LIG3P49916 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
LIG3P49916 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC16.62■□□□□ 0.25
LIG3P49916 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIG3P49916 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC16.62■□□□□ 0.25
LIG3P49916 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
LIG3P49916 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LIG3P49916 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LIG3P49916 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIG3P49916 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LIG3P49916 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIG3P49916 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC16.62■□□□□ 0.25
LIG3P49916 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LIG3P49916 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC16.61■□□□□ 0.25
LIG3P49916 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
LIG3P49916 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIG3P49916 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.61■□□□□ 0.25
LIG3P49916 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
LIG3P49916 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
LIG3P49916 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
LIG3P49916 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIG3P49916 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIG3P49916 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC16.61■□□□□ 0.25
LIG3P49916 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC16.61■□□□□ 0.25
LIG3P49916 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC16.61■□□□□ 0.25
LIG3P49916 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIG3P49916 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIG3P49916 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIG3P49916 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LIG3P49916 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
LIG3P49916 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LIG3P49916 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIG3P49916 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC16.61■□□□□ 0.25
LIG3P49916 AL627223.1-201ENST00000416693 442 ntBASIC16.61■□□□□ 0.25
LIG3P49916 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC16.61■□□□□ 0.25
LIG3P49916 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC16.61■□□□□ 0.25
LIG3P49916 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LIG3P49916 IGHV3-62-201ENST00000520057 340 ntBASIC16.61■□□□□ 0.25
LIG3P49916 RNF34-208ENST00000555076 593 ntTSL 3 BASIC16.61■□□□□ 0.25
LIG3P49916 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIG3P49916 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC16.61■□□□□ 0.25
LIG3P49916 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC16.61■□□□□ 0.25
LIG3P49916 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIG3P49916 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.61■□□□□ 0.25
LIG3P49916 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC16.61■□□□□ 0.25
LIG3P49916 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIG3P49916 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIG3P49916 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIG3P49916 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
LIG3P49916 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIG3P49916 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIG3P49916 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC16.61■□□□□ 0.25
LIG3P49916 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIG3P49916 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIG3P49916 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LIG3P49916 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIG3P49916 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LIG3P49916 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LIG3P49916 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIG3P49916 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LIG3P49916 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LIG3P49916 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LIG3P49916 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIG3P49916 MIR600HG-201ENST00000449175 5984 ntBASIC16.6■□□□□ 0.25
LIG3P49916 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
LIG3P49916 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIG3P49916 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIG3P49916 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIG3P49916 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
LIG3P49916 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
LIG3P49916 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIG3P49916 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
LIG3P49916 GGT4P-201ENST00000623672 1708 ntBASIC16.6■□□□□ 0.25
LIG3P49916 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIG3P49916 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIG3P49916 TSEN15P1-201ENST00000423257 515 ntBASIC16.6■□□□□ 0.25
LIG3P49916 AC023141.5-201ENST00000458585 616 ntBASIC16.6■□□□□ 0.25
LIG3P49916 AC069335.1-201ENST00000489972 472 ntBASIC16.6■□□□□ 0.25
LIG3P49916 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.6■□□□□ 0.25
LIG3P49916 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC16.6■□□□□ 0.25
LIG3P49916 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LIG3P49916 LINC01225-203ENST00000563550 1244 ntBASIC16.6■□□□□ 0.25
LIG3P49916 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
LIG3P49916 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LIG3P49916 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC16.6■□□□□ 0.25
LIG3P49916 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC16.6■□□□□ 0.25
LIG3P49916 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC16.6■□□□□ 0.25
LIG3P49916 AC112504.1-201ENST00000623415 1841 ntBASIC16.6■□□□□ 0.25
LIG3P49916 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIG3P49916 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC16.6■□□□□ 0.25
LIG3P49916 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIG3P49916 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC16.6■□□□□ 0.25
LIG3P49916 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.6■□□□□ 0.25
LIG3P49916 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LIG3P49916 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
LIG3P49916 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
LIG3P49916 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIG3P49916 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms