Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTPN9P43378 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC16.29■□□□□ 0.2
PTPN9P43378 TBCB-211ENST00000589996 724 ntTSL 3 BASIC16.29■□□□□ 0.2
PTPN9P43378 RNA5-8SN1-201ENST00000610460 153 ntBASIC16.29■□□□□ 0.2
PTPN9P43378 RNA5-8SN5-202ENST00000612463 153 ntBASIC16.29■□□□□ 0.2
PTPN9P43378 RNA5-8SN4-201ENST00000613359 153 ntBASIC16.29■□□□□ 0.2
PTPN9P43378 RNA5-8SN5-201ENST00000619471 153 ntBASIC16.29■□□□□ 0.2
PTPN9P43378 AL158212.4-201ENST00000624062 1286 ntBASIC16.29■□□□□ 0.2
PTPN9P43378 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTPN9P43378 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC16.29■□□□□ 0.2
PTPN9P43378 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTPN9P43378 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC16.29■□□□□ 0.2
PTPN9P43378 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTPN9P43378 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC16.29■□□□□ 0.2
PTPN9P43378 AC138035.3-201ENST00000622706 2791 ntBASIC16.29■□□□□ 0.2
PTPN9P43378 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PTPN9P43378 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC16.29■□□□□ 0.2
PTPN9P43378 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTPN9P43378 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTPN9P43378 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTPN9P43378 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTPN9P43378 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
PTPN9P43378 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
PTPN9P43378 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PTPN9P43378 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTPN9P43378 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PTPN9P43378 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC16.28■□□□□ 0.2
PTPN9P43378 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTPN9P43378 AC068418.2-201ENST00000577309 3703 ntBASIC16.28■□□□□ 0.2
PTPN9P43378 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTPN9P43378 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC16.28■□□□□ 0.2
PTPN9P43378 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTPN9P43378 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PTPN9P43378 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PTPN9P43378 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTPN9P43378 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC16.28■□□□□ 0.2
PTPN9P43378 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC16.28■□□□□ 0.2
PTPN9P43378 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTPN9P43378 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC16.28■□□□□ 0.2
PTPN9P43378 INGX-202ENST00000489074 768 ntBASIC16.28■□□□□ 0.2
PTPN9P43378 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC16.28■□□□□ 0.2
PTPN9P43378 AC104794.3-201ENST00000566840 1248 ntBASIC16.28■□□□□ 0.2
PTPN9P43378 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC16.28■□□□□ 0.2
PTPN9P43378 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC16.28■□□□□ 0.2
PTPN9P43378 AC004790.1-201ENST00000612686 536 ntBASIC16.28■□□□□ 0.2
PTPN9P43378 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
PTPN9P43378 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PTPN9P43378 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PTPN9P43378 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTPN9P43378 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PTPN9P43378 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTPN9P43378 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTPN9P43378 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTPN9P43378 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
PTPN9P43378 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTPN9P43378 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PTPN9P43378 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTPN9P43378 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTPN9P43378 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.28■□□□□ 0.2
PTPN9P43378 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
PTPN9P43378 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC16.27■□□□□ 0.2
PTPN9P43378 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC16.27■□□□□ 0.2
PTPN9P43378 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PTPN9P43378 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC16.27■□□□□ 0.2
PTPN9P43378 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PTPN9P43378 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
PTPN9P43378 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PTPN9P43378 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
PTPN9P43378 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC16.27■□□□□ 0.2
PTPN9P43378 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
PTPN9P43378 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PTPN9P43378 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
PTPN9P43378 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PTPN9P43378 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC16.27■□□□□ 0.2
PTPN9P43378 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC16.27■□□□□ 0.2
PTPN9P43378 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
PTPN9P43378 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PTPN9P43378 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PTPN9P43378 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC16.27■□□□□ 0.2
PTPN9P43378 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC16.27■□□□□ 0.2
PTPN9P43378 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC16.27■□□□□ 0.2
PTPN9P43378 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC16.27■□□□□ 0.2
PTPN9P43378 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
PTPN9P43378 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PTPN9P43378 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.27■□□□□ 0.2
PTPN9P43378 STRN-202ENST00000379213 2254 ntTSL 5 BASIC16.27■□□□□ 0.2
PTPN9P43378 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
PTPN9P43378 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC16.27■□□□□ 0.19
PTPN9P43378 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PTPN9P43378 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
PTPN9P43378 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.19
PTPN9P43378 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
PTPN9P43378 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.19
PTPN9P43378 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
PTPN9P43378 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
PTPN9P43378 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PTPN9P43378 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.27■□□□□ 0.19
PTPN9P43378 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
PTPN9P43378 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PTPN9P43378 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms