Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AL645933.1-201ENST00000440087 609 ntBASIC11.9□□□□□ -0.5
COL6A5A8TX70 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC11.9□□□□□ -0.5
COL6A5A8TX70 AC023389.1-201ENST00000577846 576 ntTSL 4 BASIC11.9□□□□□ -0.5
COL6A5A8TX70 MIR3677-201ENST00000578964 60 ntBASIC11.9□□□□□ -0.5
COL6A5A8TX70 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC11.9□□□□□ -0.5
COL6A5A8TX70 AC138466.3-201ENST00000619983 221 ntBASIC11.9□□□□□ -0.5
COL6A5A8TX70 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC11.9□□□□□ -0.5
COL6A5A8TX70 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
COL6A5A8TX70 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC11.9□□□□□ -0.5
COL6A5A8TX70 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
COL6A5A8TX70 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC11.9□□□□□ -0.5
COL6A5A8TX70 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
COL6A5A8TX70 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
COL6A5A8TX70 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
COL6A5A8TX70 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
COL6A5A8TX70 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
COL6A5A8TX70 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC11.9□□□□□ -0.5
COL6A5A8TX70 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
COL6A5A8TX70 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
COL6A5A8TX70 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
COL6A5A8TX70 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC11.9□□□□□ -0.5
COL6A5A8TX70 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC11.9□□□□□ -0.5
COL6A5A8TX70 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
COL6A5A8TX70 AC004837.1-201ENST00000446267 564 ntBASIC11.9□□□□□ -0.5
COL6A5A8TX70 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC11.9□□□□□ -0.5
COL6A5A8TX70 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC11.9□□□□□ -0.5
COL6A5A8TX70 AC007656.1-201ENST00000552238 573 ntTSL 4 BASIC11.9□□□□□ -0.5
COL6A5A8TX70 AC027237.1-201ENST00000560942 655 ntBASIC11.9□□□□□ -0.5
COL6A5A8TX70 AC010503.4-201ENST00000615487 688 ntBASIC11.9□□□□□ -0.5
COL6A5A8TX70 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
COL6A5A8TX70 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
COL6A5A8TX70 STAG1-206ENST00000480733 1304 ntTSL 2 BASIC11.9□□□□□ -0.5
COL6A5A8TX70 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC11.9□□□□□ -0.5
COL6A5A8TX70 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
COL6A5A8TX70 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
COL6A5A8TX70 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
COL6A5A8TX70 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC11.9□□□□□ -0.5
COL6A5A8TX70 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
COL6A5A8TX70 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
COL6A5A8TX70 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
COL6A5A8TX70 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
COL6A5A8TX70 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC11.9□□□□□ -0.51
COL6A5A8TX70 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.51
COL6A5A8TX70 ZNF226-201ENST00000300823 817 ntTSL 1 (best) BASIC11.9□□□□□ -0.51
COL6A5A8TX70 DYNLT1-201ENST00000367085 774 ntTSL 2 BASIC11.9□□□□□ -0.51
COL6A5A8TX70 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC11.9□□□□□ -0.51
COL6A5A8TX70 POLR3H-204ENST00000407461 802 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
COL6A5A8TX70 AL354861.1-201ENST00000445213 355 ntBASIC11.9□□□□□ -0.51
COL6A5A8TX70 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
COL6A5A8TX70 AC087620.1-201ENST00000520037 447 ntTSL 3 BASIC11.9□□□□□ -0.51
COL6A5A8TX70 AP004550.1-201ENST00000532652 514 ntTSL 3 BASIC11.9□□□□□ -0.51
COL6A5A8TX70 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC11.9□□□□□ -0.51
COL6A5A8TX70 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC11.9□□□□□ -0.51
COL6A5A8TX70 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC11.9□□□□□ -0.51
COL6A5A8TX70 AC020931.1-201ENST00000589622 1346 ntBASIC11.9□□□□□ -0.51
COL6A5A8TX70 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC11.89□□□□□ -0.51
COL6A5A8TX70 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC11.89□□□□□ -0.51
COL6A5A8TX70 GGT3P-204ENST00000453783 1664 ntBASIC11.89□□□□□ -0.51
COL6A5A8TX70 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
COL6A5A8TX70 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC11.89□□□□□ -0.51
COL6A5A8TX70 STK26-204ENST00000481105 1835 ntTSL 2 BASIC11.89□□□□□ -0.51
COL6A5A8TX70 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
COL6A5A8TX70 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
COL6A5A8TX70 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
COL6A5A8TX70 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
COL6A5A8TX70 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
COL6A5A8TX70 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
COL6A5A8TX70 ATXN3-201ENST00000340660 1205 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
COL6A5A8TX70 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
COL6A5A8TX70 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
COL6A5A8TX70 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
COL6A5A8TX70 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
COL6A5A8TX70 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
COL6A5A8TX70 GDNF-207ENST00000515058 764 ntTSL 5 BASIC11.89□□□□□ -0.51
COL6A5A8TX70 CCNC-217ENST00000523985 958 ntTSL 2 BASIC11.89□□□□□ -0.51
COL6A5A8TX70 AP001282.1-201ENST00000531301 1499 ntBASIC11.89□□□□□ -0.51
COL6A5A8TX70 MYL6-218ENST00000550697 901 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
COL6A5A8TX70 MBP-238ENST00000580402 915 ntTSL 5 BASIC11.89□□□□□ -0.51
COL6A5A8TX70 SELENOW-202ENST00000593892 550 ntAPPRIS P1 TSL 3 BASIC11.89□□□□□ -0.51
COL6A5A8TX70 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC11.89□□□□□ -0.51
COL6A5A8TX70 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
COL6A5A8TX70 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
COL6A5A8TX70 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
COL6A5A8TX70 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC11.89□□□□□ -0.51
COL6A5A8TX70 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
COL6A5A8TX70 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC11.89□□□□□ -0.51
COL6A5A8TX70 BICD1-207ENST00000551848 1962 ntBASIC11.89□□□□□ -0.51
COL6A5A8TX70 AC134407.2-201ENST00000625089 1978 ntBASIC11.89□□□□□ -0.51
COL6A5A8TX70 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
COL6A5A8TX70 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC11.89□□□□□ -0.51
COL6A5A8TX70 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
COL6A5A8TX70 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
COL6A5A8TX70 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC11.89□□□□□ -0.51
COL6A5A8TX70 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
COL6A5A8TX70 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
COL6A5A8TX70 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
COL6A5A8TX70 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
COL6A5A8TX70 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC11.89□□□□□ -0.51
COL6A5A8TX70 RBM38-204ENST00000371219 760 ntTSL 2 BASIC11.89□□□□□ -0.51
COL6A5A8TX70 ZNF286A-201ENST00000395893 654 ntTSL 3 BASIC11.89□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms