Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 ZNF890P-202ENST00000530367 1156 ntBASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 RFPL4AP1-201ENST00000530883 850 ntBASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 AC103702.1-201ENST00000548801 2630 ntBASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 AL513477.1-201ENST00000602865 2407 ntBASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 RPL13P2-201ENST00000440687 659 ntBASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 SSH2-210ENST00000582084 560 ntTSL 3 BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 AL390955.2-201ENST00000603032 514 ntBASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 ORC5-208ENST00000626700 344 ntTSL 3 BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 AF228730.6-201ENST00000641497 218 ntBASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 AC084121.3-201ENST00000641716 218 ntBASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
AP4E1Q9UPM8 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
AP4E1Q9UPM8 AC068587.6-202ENST00000641839 5619 ntBASIC16.3■□□□□ 0.2
AP4E1Q9UPM8 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
AP4E1Q9UPM8 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
AP4E1Q9UPM8 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
AP4E1Q9UPM8 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
AP4E1Q9UPM8 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
AP4E1Q9UPM8 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC16.3■□□□□ 0.2
AP4E1Q9UPM8 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
AP4E1Q9UPM8 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
AP4E1Q9UPM8 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
AP4E1Q9UPM8 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC16.3■□□□□ 0.2
AP4E1Q9UPM8 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
AP4E1Q9UPM8 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
AP4E1Q9UPM8 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
AP4E1Q9UPM8 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms