Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
H3F3AP84243 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC14.07□□□□□ -0.16
H3F3AP84243 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
H3F3AP84243 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC14.07□□□□□ -0.16
H3F3AP84243 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
H3F3AP84243 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
H3F3AP84243 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
H3F3AP84243 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
H3F3AP84243 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
H3F3AP84243 DEK-201ENST00000244776 1441 ntTSL 2 BASIC14.07□□□□□ -0.16
H3F3AP84243 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC14.07□□□□□ -0.16
H3F3AP84243 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
H3F3AP84243 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
H3F3AP84243 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
H3F3AP84243 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
H3F3AP84243 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
H3F3AP84243 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC14.06□□□□□ -0.16
H3F3AP84243 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
H3F3AP84243 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC14.06□□□□□ -0.16
H3F3AP84243 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
H3F3AP84243 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
H3F3AP84243 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
H3F3AP84243 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
H3F3AP84243 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
H3F3AP84243 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC14.06□□□□□ -0.16
H3F3AP84243 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
H3F3AP84243 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
H3F3AP84243 HNRNPA1P40-201ENST00000426371 1278 ntBASIC14.06□□□□□ -0.16
H3F3AP84243 FAM8A3P-201ENST00000427218 844 ntBASIC14.06□□□□□ -0.16
H3F3AP84243 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC14.06□□□□□ -0.16
H3F3AP84243 UGT1A2P-201ENST00000454886 866 ntBASIC14.06□□□□□ -0.16
H3F3AP84243 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC14.06□□□□□ -0.16
H3F3AP84243 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC14.06□□□□□ -0.16
H3F3AP84243 SRD5A3P1-201ENST00000603021 949 ntBASIC14.06□□□□□ -0.16
H3F3AP84243 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
H3F3AP84243 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
H3F3AP84243 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC14.06□□□□□ -0.16
H3F3AP84243 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
H3F3AP84243 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC14.06□□□□□ -0.16
H3F3AP84243 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
H3F3AP84243 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC14.06□□□□□ -0.16
H3F3AP84243 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
H3F3AP84243 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC14.06□□□□□ -0.16
H3F3AP84243 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
H3F3AP84243 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
H3F3AP84243 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
H3F3AP84243 AC132872.4-202ENST00000622924 2756 ntBASIC14.05□□□□□ -0.16
H3F3AP84243 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
H3F3AP84243 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
H3F3AP84243 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC14.05□□□□□ -0.16
H3F3AP84243 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
H3F3AP84243 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
H3F3AP84243 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
H3F3AP84243 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
H3F3AP84243 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
H3F3AP84243 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
H3F3AP84243 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
H3F3AP84243 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
H3F3AP84243 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
H3F3AP84243 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
H3F3AP84243 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
H3F3AP84243 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC14.05□□□□□ -0.16
H3F3AP84243 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
H3F3AP84243 RAC2-204ENST00000406508 893 ntTSL 5 BASIC14.05□□□□□ -0.16
H3F3AP84243 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC14.05□□□□□ -0.16
H3F3AP84243 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC14.05□□□□□ -0.16
H3F3AP84243 BCRP1-201ENST00000444246 691 ntBASIC14.05□□□□□ -0.16
H3F3AP84243 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC14.05□□□□□ -0.16
H3F3AP84243 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
H3F3AP84243 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC14.05□□□□□ -0.16
H3F3AP84243 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC14.05□□□□□ -0.16
H3F3AP84243 STOM-203ENST00000538954 1257 ntTSL 5 BASIC14.05□□□□□ -0.16
H3F3AP84243 TIMM17BP1-201ENST00000545713 516 ntBASIC14.05□□□□□ -0.16
H3F3AP84243 ARL16-202ENST00000570561 768 ntTSL 2 BASIC14.05□□□□□ -0.16
H3F3AP84243 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
H3F3AP84243 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC14.05□□□□□ -0.16
H3F3AP84243 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC14.05□□□□□ -0.16
H3F3AP84243 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
H3F3AP84243 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC14.05□□□□□ -0.16
H3F3AP84243 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
H3F3AP84243 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
H3F3AP84243 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC14.05□□□□□ -0.16
H3F3AP84243 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
H3F3AP84243 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
H3F3AP84243 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC14.05□□□□□ -0.16
H3F3AP84243 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
H3F3AP84243 AC138969.3-201ENST00000546612 1459 ntBASIC14.05□□□□□ -0.16
H3F3AP84243 AC138932.2-201ENST00000548268 1459 ntBASIC14.05□□□□□ -0.16
H3F3AP84243 AC126755.4-201ENST00000549796 1459 ntBASIC14.05□□□□□ -0.16
H3F3AP84243 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC14.05□□□□□ -0.16
H3F3AP84243 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC14.05□□□□□ -0.16
H3F3AP84243 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
H3F3AP84243 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
H3F3AP84243 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
H3F3AP84243 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
H3F3AP84243 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
H3F3AP84243 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC14.04□□□□□ -0.16
H3F3AP84243 AC009090.5-201ENST00000624886 2285 ntBASIC14.04□□□□□ -0.16
H3F3AP84243 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
H3F3AP84243 BANP-201ENST00000286122 2368 ntTSL 5 BASIC14.04□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms