Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA1P55317 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA1P55317 AC013726.1-201ENST00000563747 2285 ntBASIC15.23■□□□□ 0.03
FOXA1P55317 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA1P55317 CICP11-201ENST00000434745 2827 ntBASIC15.23■□□□□ 0.03
FOXA1P55317 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA1P55317 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
FOXA1P55317 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC15.23■□□□□ 0.03
FOXA1P55317 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC15.23■□□□□ 0.03
FOXA1P55317 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC15.23■□□□□ 0.03
FOXA1P55317 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA1P55317 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC15.23■□□□□ 0.03
FOXA1P55317 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA1P55317 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA1P55317 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA1P55317 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA1P55317 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
FOXA1P55317 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC15.23■□□□□ 0.03
FOXA1P55317 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
FOXA1P55317 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
FOXA1P55317 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
FOXA1P55317 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC15.23■□□□□ 0.03
FOXA1P55317 AC005237.2-201ENST00000434368 219 ntBASIC15.23■□□□□ 0.03
FOXA1P55317 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA1P55317 SUOX-214ENST00000551841 906 ntTSL 3 BASIC15.23■□□□□ 0.03
FOXA1P55317 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC15.23■□□□□ 0.03
FOXA1P55317 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA1P55317 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA1P55317 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC15.23■□□□□ 0.03
FOXA1P55317 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA1P55317 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA1P55317 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA1P55317 AJ011931.1-201ENST00000618749 2492 ntBASIC15.23■□□□□ 0.03
FOXA1P55317 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA1P55317 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC15.23■□□□□ 0.03
FOXA1P55317 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
FOXA1P55317 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA1P55317 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA1P55317 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA1P55317 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA1P55317 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC15.23■□□□□ 0.03
FOXA1P55317 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA1P55317 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
FOXA1P55317 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA1P55317 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
FOXA1P55317 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA1P55317 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA1P55317 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA1P55317 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA1P55317 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA1P55317 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA1P55317 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC15.22■□□□□ 0.03
FOXA1P55317 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC15.22■□□□□ 0.03
FOXA1P55317 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA1P55317 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA1P55317 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA1P55317 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC15.22■□□□□ 0.03
FOXA1P55317 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA1P55317 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA1P55317 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC15.22■□□□□ 0.03
FOXA1P55317 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
FOXA1P55317 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
FOXA1P55317 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC15.22■□□□□ 0.03
FOXA1P55317 AC004461.1-201ENST00000412461 403 ntBASIC15.22■□□□□ 0.03
FOXA1P55317 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC15.22■□□□□ 0.03
FOXA1P55317 KRT18P32-201ENST00000424695 1287 ntBASIC15.22■□□□□ 0.03
FOXA1P55317 GPS2P2-201ENST00000430745 888 ntBASIC15.22■□□□□ 0.03
FOXA1P55317 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC15.22■□□□□ 0.03
FOXA1P55317 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA1P55317 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC15.22■□□□□ 0.03
FOXA1P55317 GATD1-206ENST00000526325 756 ntTSL 5 BASIC15.22■□□□□ 0.03
FOXA1P55317 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA1P55317 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC15.22■□□□□ 0.03
FOXA1P55317 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC15.22■□□□□ 0.03
FOXA1P55317 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC15.22■□□□□ 0.03
FOXA1P55317 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC15.22■□□□□ 0.03
FOXA1P55317 AC018529.1-201ENST00000613063 361 ntBASIC15.22■□□□□ 0.03
FOXA1P55317 AL513210.1-201ENST00000629608 234 ntBASIC15.22■□□□□ 0.03
FOXA1P55317 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC15.22■□□□□ 0.03
FOXA1P55317 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC15.22■□□□□ 0.03
FOXA1P55317 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC15.22■□□□□ 0.03
FOXA1P55317 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA1P55317 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA1P55317 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA1P55317 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA1P55317 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA1P55317 LINC00552-201ENST00000625151 2579 ntBASIC15.22■□□□□ 0.03
FOXA1P55317 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC15.22■□□□□ 0.03
FOXA1P55317 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC15.21■□□□□ 0.03
FOXA1P55317 GRN-214ENST00000589265 1632 ntTSL 5 BASIC15.21■□□□□ 0.03
FOXA1P55317 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC15.21■□□□□ 0.03
FOXA1P55317 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA1P55317 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA1P55317 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA1P55317 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA1P55317 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA1P55317 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC15.21■□□□□ 0.03
FOXA1P55317 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA1P55317 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA1P55317 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 59.7 ms