Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HADHAP40939 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC15.96■□□□□ 0.15
HADHAP40939 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
HADHAP40939 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC15.96■□□□□ 0.15
HADHAP40939 LRRFIP1P1-201ENST00000498774 2246 ntBASIC15.96■□□□□ 0.15
HADHAP40939 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HADHAP40939 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
HADHAP40939 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.14
HADHAP40939 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC15.96■□□□□ 0.14
HADHAP40939 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.14
HADHAP40939 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
HADHAP40939 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC15.95■□□□□ 0.14
HADHAP40939 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC15.95■□□□□ 0.14
HADHAP40939 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HADHAP40939 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HADHAP40939 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
HADHAP40939 CETN4P-206ENST00000642099 2168 ntBASIC15.95■□□□□ 0.14
HADHAP40939 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
HADHAP40939 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC15.95■□□□□ 0.14
HADHAP40939 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HADHAP40939 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
HADHAP40939 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HADHAP40939 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
HADHAP40939 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
HADHAP40939 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
HADHAP40939 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HADHAP40939 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
HADHAP40939 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC15.95■□□□□ 0.14
HADHAP40939 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HADHAP40939 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HADHAP40939 PHKG1P2-201ENST00000457537 863 ntBASIC15.95■□□□□ 0.14
HADHAP40939 SLBP-205ENST00000488267 987 ntTSL 2 BASIC15.95■□□□□ 0.14
HADHAP40939 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC15.95■□□□□ 0.14
HADHAP40939 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC15.95■□□□□ 0.14
HADHAP40939 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
HADHAP40939 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC15.95■□□□□ 0.14
HADHAP40939 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HADHAP40939 KRT8P12-202ENST00000472924 1397 ntBASIC15.95■□□□□ 0.14
HADHAP40939 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
HADHAP40939 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
HADHAP40939 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HADHAP40939 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HADHAP40939 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC15.95■□□□□ 0.14
HADHAP40939 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC15.95■□□□□ 0.14
HADHAP40939 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HADHAP40939 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
HADHAP40939 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
HADHAP40939 GSN-206ENST00000394353 2311 ntTSL 2 BASIC15.95■□□□□ 0.14
HADHAP40939 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
HADHAP40939 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HADHAP40939 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HADHAP40939 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.95■□□□□ 0.14
HADHAP40939 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HADHAP40939 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
HADHAP40939 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HADHAP40939 TUBB3P1-201ENST00000405796 1332 ntBASIC15.94■□□□□ 0.14
HADHAP40939 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
HADHAP40939 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC15.94■□□□□ 0.14
HADHAP40939 SLC9A7P1-201ENST00000554295 3311 ntBASIC15.94■□□□□ 0.14
HADHAP40939 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC15.94■□□□□ 0.14
HADHAP40939 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
HADHAP40939 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HADHAP40939 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HADHAP40939 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
HADHAP40939 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
HADHAP40939 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC15.94■□□□□ 0.14
HADHAP40939 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HADHAP40939 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HADHAP40939 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HADHAP40939 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
HADHAP40939 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
HADHAP40939 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
HADHAP40939 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC15.94■□□□□ 0.14
HADHAP40939 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC15.94■□□□□ 0.14
HADHAP40939 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC15.94■□□□□ 0.14
HADHAP40939 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
HADHAP40939 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HADHAP40939 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
HADHAP40939 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HADHAP40939 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC15.94■□□□□ 0.14
HADHAP40939 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC15.94■□□□□ 0.14
HADHAP40939 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC15.94■□□□□ 0.14
HADHAP40939 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC15.94■□□□□ 0.14
HADHAP40939 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC15.94■□□□□ 0.14
HADHAP40939 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
HADHAP40939 SPIB-207ENST00000597855 564 ntTSL 4 BASIC15.94■□□□□ 0.14
HADHAP40939 AL589739.1-201ENST00000607720 493 ntBASIC15.94■□□□□ 0.14
HADHAP40939 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
HADHAP40939 GPER1-207ENST00000619052 571 ntTSL 2 BASIC15.94■□□□□ 0.14
HADHAP40939 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
HADHAP40939 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
HADHAP40939 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HADHAP40939 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
HADHAP40939 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
HADHAP40939 FLII-221ENST00000578558 2377 ntTSL 5 BASIC15.94■□□□□ 0.14
HADHAP40939 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
HADHAP40939 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC15.94■□□□□ 0.14
HADHAP40939 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HADHAP40939 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HADHAP40939 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms