Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SDC1P18827 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC14.98□□□□□ -0.01
SDC1P18827 RER1-203ENST00000378513 3000 ntTSL 3 BASIC14.98□□□□□ -0.01
SDC1P18827 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
SDC1P18827 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SDC1P18827 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
SDC1P18827 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
SDC1P18827 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SDC1P18827 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SDC1P18827 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC14.98□□□□□ -0.01
SDC1P18827 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SDC1P18827 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
SDC1P18827 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC14.98□□□□□ -0.01
SDC1P18827 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
SDC1P18827 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SDC1P18827 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC14.98□□□□□ -0.01
SDC1P18827 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SDC1P18827 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC14.98□□□□□ -0.01
SDC1P18827 RPSAP43-201ENST00000402237 625 ntBASIC14.98□□□□□ -0.01
SDC1P18827 MTND6P24-201ENST00000440466 518 ntBASIC14.98□□□□□ -0.01
SDC1P18827 TARDBPP1-201ENST00000442013 1203 ntBASIC14.98□□□□□ -0.01
SDC1P18827 PTK7-212ENST00000476760 902 ntTSL 2 BASIC14.98□□□□□ -0.01
SDC1P18827 AC112482.1-201ENST00000492080 688 ntBASIC14.98□□□□□ -0.01
SDC1P18827 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC14.98□□□□□ -0.01
SDC1P18827 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC14.98□□□□□ -0.01
SDC1P18827 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
SDC1P18827 MIR3687-2-201ENST00000577708 61 ntBASIC14.98□□□□□ -0.01
SDC1P18827 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SDC1P18827 MIR3687-1-201ENST00000614492 61 ntBASIC14.98□□□□□ -0.01
SDC1P18827 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SDC1P18827 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SDC1P18827 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
SDC1P18827 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SDC1P18827 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
SDC1P18827 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SDC1P18827 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SDC1P18827 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC14.98□□□□□ -0.01
SDC1P18827 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC14.98□□□□□ -0.01
SDC1P18827 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC14.98□□□□□ -0.01
SDC1P18827 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC14.98□□□□□ -0.01
SDC1P18827 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SDC1P18827 AL035456.1-201ENST00000456064 1369 ntBASIC14.98□□□□□ -0.01
SDC1P18827 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC14.98□□□□□ -0.01
SDC1P18827 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SDC1P18827 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC14.97□□□□□ -0.01
SDC1P18827 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
SDC1P18827 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SDC1P18827 MARS-233ENST00000628866 2583 ntTSL 5 BASIC14.97□□□□□ -0.01
SDC1P18827 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC14.97□□□□□ -0.01
SDC1P18827 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
SDC1P18827 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC14.97□□□□□ -0.01
SDC1P18827 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SDC1P18827 LINC00528-201ENST00000600723 2160 ntBASIC14.97□□□□□ -0.01
SDC1P18827 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC14.97□□□□□ -0.01
SDC1P18827 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SDC1P18827 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SDC1P18827 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SDC1P18827 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC14.97□□□□□ -0.01
SDC1P18827 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
SDC1P18827 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SDC1P18827 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SDC1P18827 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC14.97□□□□□ -0.01
SDC1P18827 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC14.97□□□□□ -0.01
SDC1P18827 BX842568.4-201ENST00000421222 227 ntBASIC14.97□□□□□ -0.01
SDC1P18827 AC023141.5-201ENST00000458585 616 ntBASIC14.97□□□□□ -0.01
SDC1P18827 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SDC1P18827 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC14.97□□□□□ -0.01
SDC1P18827 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC14.97□□□□□ -0.01
SDC1P18827 MIR6080-201ENST00000617359 66 ntBASIC14.97□□□□□ -0.01
SDC1P18827 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC14.97□□□□□ -0.01
SDC1P18827 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC14.97□□□□□ -0.01
SDC1P18827 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC14.97□□□□□ -0.01
SDC1P18827 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SDC1P18827 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
SDC1P18827 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
SDC1P18827 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SDC1P18827 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC14.97□□□□□ -0.01
SDC1P18827 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
SDC1P18827 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
SDC1P18827 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
SDC1P18827 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SDC1P18827 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
SDC1P18827 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SDC1P18827 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SDC1P18827 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SDC1P18827 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SDC1P18827 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SDC1P18827 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SDC1P18827 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SDC1P18827 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
SDC1P18827 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
SDC1P18827 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SDC1P18827 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SDC1P18827 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC14.96□□□□□ -0.01
SDC1P18827 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC14.96□□□□□ -0.01
SDC1P18827 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SDC1P18827 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SDC1P18827 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SDC1P18827 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SDC1P18827 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC14.96□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms