Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
SPTA1P02549 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SPTA1P02549 CFL1-214ENST00000534769 758 ntTSL 2 BASIC14.19□□□□□ -0.14
SPTA1P02549 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC14.19□□□□□ -0.14
SPTA1P02549 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC14.19□□□□□ -0.14
SPTA1P02549 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SPTA1P02549 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
SPTA1P02549 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
SPTA1P02549 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC14.19□□□□□ -0.14
SPTA1P02549 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
SPTA1P02549 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC14.19□□□□□ -0.14
SPTA1P02549 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SPTA1P02549 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SPTA1P02549 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
SPTA1P02549 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC14.18□□□□□ -0.14
SPTA1P02549 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
SPTA1P02549 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
SPTA1P02549 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC14.18□□□□□ -0.14
SPTA1P02549 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SPTA1P02549 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC14.18□□□□□ -0.14
SPTA1P02549 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SPTA1P02549 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC14.18□□□□□ -0.14
SPTA1P02549 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SPTA1P02549 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
SPTA1P02549 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
SPTA1P02549 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SPTA1P02549 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SPTA1P02549 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SPTA1P02549 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC14.18□□□□□ -0.14
SPTA1P02549 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
SPTA1P02549 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
SPTA1P02549 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SPTA1P02549 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
SPTA1P02549 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SPTA1P02549 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC14.18□□□□□ -0.14
SPTA1P02549 MSRA-203ENST00000441698 788 ntTSL 2 BASIC14.18□□□□□ -0.14
SPTA1P02549 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
SPTA1P02549 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
SPTA1P02549 AC015910.1-201ENST00000579400 975 ntBASIC14.18□□□□□ -0.14
SPTA1P02549 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC14.18□□□□□ -0.14
SPTA1P02549 NKG7-204ENST00000595217 816 ntTSL 2 BASIC14.18□□□□□ -0.14
SPTA1P02549 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
SPTA1P02549 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC14.18□□□□□ -0.14
SPTA1P02549 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC14.18□□□□□ -0.14
SPTA1P02549 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
SPTA1P02549 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SPTA1P02549 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SPTA1P02549 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
SPTA1P02549 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
SPTA1P02549 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC14.18□□□□□ -0.14
SPTA1P02549 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
SPTA1P02549 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC14.18□□□□□ -0.14
SPTA1P02549 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SPTA1P02549 FBXO16-202ENST00000380254 1343 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
SPTA1P02549 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SPTA1P02549 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC14.17□□□□□ -0.14
SPTA1P02549 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC14.17□□□□□ -0.14
SPTA1P02549 AC125604.1-201ENST00000496255 707 ntBASIC14.17□□□□□ -0.14
SPTA1P02549 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SPTA1P02549 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC14.17□□□□□ -0.14
SPTA1P02549 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
SPTA1P02549 ACR-203ENST00000529621 708 ntTSL 5 BASIC14.17□□□□□ -0.14
SPTA1P02549 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC14.17□□□□□ -0.14
SPTA1P02549 HNRNPA1P48-202ENST00000565308 961 ntBASIC14.17□□□□□ -0.14
SPTA1P02549 AC011491.1-203ENST00000637688 543 ntBASIC14.17□□□□□ -0.14
SPTA1P02549 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
SPTA1P02549 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC14.17□□□□□ -0.14
SPTA1P02549 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
SPTA1P02549 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC14.17□□□□□ -0.14
SPTA1P02549 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC14.17□□□□□ -0.14
SPTA1P02549 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC14.17□□□□□ -0.14
SPTA1P02549 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
SPTA1P02549 AC005052.1-201ENST00000625181 2492 ntBASIC14.17□□□□□ -0.14
SPTA1P02549 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
SPTA1P02549 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
SPTA1P02549 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC14.17□□□□□ -0.14
SPTA1P02549 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
SPTA1P02549 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
SPTA1P02549 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
SPTA1P02549 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
SPTA1P02549 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC14.17□□□□□ -0.14
SPTA1P02549 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SPTA1P02549 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
SPTA1P02549 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC14.17□□□□□ -0.14
SPTA1P02549 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
SPTA1P02549 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
SPTA1P02549 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SPTA1P02549 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
SPTA1P02549 BX323043.1-201ENST00000641006 1765 ntBASIC14.17□□□□□ -0.14
SPTA1P02549 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SPTA1P02549 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SPTA1P02549 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SPTA1P02549 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC14.17□□□□□ -0.14
SPTA1P02549 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SPTA1P02549 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC14.17□□□□□ -0.14
SPTA1P02549 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC14.17□□□□□ -0.14
SPTA1P02549 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
SPTA1P02549 AC022217.1-201ENST00000521069 738 ntBASIC14.17□□□□□ -0.14
SPTA1P02549 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC14.17□□□□□ -0.14
SPTA1P02549 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms