Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC15.22■□□□□ 0.03
VPS13AQ96RL7 AC005740.2-201ENST00000511085 419 ntBASIC15.22■□□□□ 0.03
VPS13AQ96RL7 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC15.22■□□□□ 0.03
VPS13AQ96RL7 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
VPS13AQ96RL7 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
VPS13AQ96RL7 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC15.21■□□□□ 0.03
VPS13AQ96RL7 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC15.21■□□□□ 0.03
VPS13AQ96RL7 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC15.21■□□□□ 0.03
VPS13AQ96RL7 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
VPS13AQ96RL7 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC15.21■□□□□ 0.03
VPS13AQ96RL7 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
VPS13AQ96RL7 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
VPS13AQ96RL7 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC15.21■□□□□ 0.03
VPS13AQ96RL7 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC15.21■□□□□ 0.03
VPS13AQ96RL7 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
VPS13AQ96RL7 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS13AQ96RL7 AC020922.3-201ENST00000595064 547 ntBASIC15.21■□□□□ 0.03
VPS13AQ96RL7 AL023803.2-201ENST00000620080 638 ntBASIC15.21■□□□□ 0.03
VPS13AQ96RL7 MIR6858-201ENST00000620733 67 ntBASIC15.21■□□□□ 0.03
VPS13AQ96RL7 AC006453.1-201ENST00000636037 1257 ntBASIC15.21■□□□□ 0.03
VPS13AQ96RL7 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
VPS13AQ96RL7 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS13AQ96RL7 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC15.21■□□□□ 0.03
VPS13AQ96RL7 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS13AQ96RL7 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC15.21■□□□□ 0.03
VPS13AQ96RL7 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC15.21■□□□□ 0.03
VPS13AQ96RL7 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC15.21■□□□□ 0.03
VPS13AQ96RL7 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC15.21■□□□□ 0.03
VPS13AQ96RL7 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC15.21■□□□□ 0.03
VPS13AQ96RL7 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
VPS13AQ96RL7 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS13AQ96RL7 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS13AQ96RL7 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
VPS13AQ96RL7 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC15.21■□□□□ 0.03
VPS13AQ96RL7 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC15.21■□□□□ 0.03
VPS13AQ96RL7 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC15.21■□□□□ 0.03
VPS13AQ96RL7 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC15.21■□□□□ 0.03
VPS13AQ96RL7 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC15.21■□□□□ 0.03
VPS13AQ96RL7 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
VPS13AQ96RL7 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC15.21■□□□□ 0.03
VPS13AQ96RL7 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC15.21■□□□□ 0.02
VPS13AQ96RL7 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
VPS13AQ96RL7 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
VPS13AQ96RL7 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
VPS13AQ96RL7 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS13AQ96RL7 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS13AQ96RL7 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
VPS13AQ96RL7 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
VPS13AQ96RL7 DDX39AP1-201ENST00000445147 1181 ntBASIC15.2■□□□□ 0.02
VPS13AQ96RL7 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC15.2■□□□□ 0.02
VPS13AQ96RL7 FTLP5-201ENST00000586853 534 ntBASIC15.2■□□□□ 0.02
VPS13AQ96RL7 AC097359.3-201ENST00000603982 1210 ntBASIC15.2■□□□□ 0.02
VPS13AQ96RL7 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC15.2■□□□□ 0.02
VPS13AQ96RL7 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS13AQ96RL7 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
VPS13AQ96RL7 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC15.2■□□□□ 0.02
VPS13AQ96RL7 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC15.2■□□□□ 0.02
VPS13AQ96RL7 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS13AQ96RL7 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS13AQ96RL7 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC15.2■□□□□ 0.02
VPS13AQ96RL7 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS13AQ96RL7 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS13AQ96RL7 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
VPS13AQ96RL7 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
VPS13AQ96RL7 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS13AQ96RL7 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
VPS13AQ96RL7 SOD2-202ENST00000367054 815 ntTSL 2 BASIC15.2■□□□□ 0.02
VPS13AQ96RL7 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
VPS13AQ96RL7 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC15.2■□□□□ 0.02
VPS13AQ96RL7 AL158070.2-201ENST00000623713 1621 ntBASIC15.2■□□□□ 0.02
VPS13AQ96RL7 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS13AQ96RL7 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC15.2■□□□□ 0.02
VPS13AQ96RL7 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS13AQ96RL7 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC15.2■□□□□ 0.02
VPS13AQ96RL7 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS13AQ96RL7 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS13AQ96RL7 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
VPS13AQ96RL7 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
VPS13AQ96RL7 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
VPS13AQ96RL7 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC15.2■□□□□ 0.02
VPS13AQ96RL7 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC15.2■□□□□ 0.02
VPS13AQ96RL7 AC015909.3-201ENST00000572855 1794 ntBASIC15.2■□□□□ 0.02
VPS13AQ96RL7 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS13AQ96RL7 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
VPS13AQ96RL7 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC15.2■□□□□ 0.02
VPS13AQ96RL7 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
VPS13AQ96RL7 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC15.2■□□□□ 0.02
VPS13AQ96RL7 C2orf69P1-201ENST00000563532 1093 ntBASIC15.2■□□□□ 0.02
VPS13AQ96RL7 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS13AQ96RL7 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC15.2■□□□□ 0.02
VPS13AQ96RL7 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
VPS13AQ96RL7 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VPS13AQ96RL7 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VPS13AQ96RL7 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
VPS13AQ96RL7 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
VPS13AQ96RL7 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VPS13AQ96RL7 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
VPS13AQ96RL7 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC15.19■□□□□ 0.02
VPS13AQ96RL7 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC15.19■□□□□ 0.02
VPS13AQ96RL7 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms