Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS53Q5VIR6 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
VPS53Q5VIR6 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS53Q5VIR6 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VPS53Q5VIR6 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS53Q5VIR6 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS53Q5VIR6 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC19.01■□□□□ 0.63
VPS53Q5VIR6 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS53Q5VIR6 AC009090.5-201ENST00000624886 2285 ntBASIC19.01■□□□□ 0.63
VPS53Q5VIR6 RAC2-204ENST00000406508 893 ntTSL 5 BASIC19.01■□□□□ 0.63
VPS53Q5VIR6 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VPS53Q5VIR6 AC136604.1-201ENST00000418535 575 ntBASIC19.01■□□□□ 0.63
VPS53Q5VIR6 SERBP1P3-201ENST00000459980 809 ntBASIC19.01■□□□□ 0.63
VPS53Q5VIR6 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC19.01■□□□□ 0.63
VPS53Q5VIR6 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VPS53Q5VIR6 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC19.01■□□□□ 0.63
VPS53Q5VIR6 SPCS2P1-201ENST00000561636 679 ntBASIC19.01■□□□□ 0.63
VPS53Q5VIR6 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC19.01■□□□□ 0.63
VPS53Q5VIR6 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC19.01■□□□□ 0.63
VPS53Q5VIR6 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VPS53Q5VIR6 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS53Q5VIR6 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS53Q5VIR6 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS53Q5VIR6 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VPS53Q5VIR6 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS53Q5VIR6 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS53Q5VIR6 AC022144.1-201ENST00000602255 1580 ntBASIC19.01■□□□□ 0.63
VPS53Q5VIR6 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VPS53Q5VIR6 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC19.01■□□□□ 0.63
VPS53Q5VIR6 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS53Q5VIR6 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS53Q5VIR6 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC19.01■□□□□ 0.63
VPS53Q5VIR6 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS53Q5VIR6 AC092127.1-201ENST00000567093 3455 ntBASIC19.01■□□□□ 0.63
VPS53Q5VIR6 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
VPS53Q5VIR6 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC19.01■□□□□ 0.63
VPS53Q5VIR6 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS53Q5VIR6 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS53Q5VIR6 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC19■□□□□ 0.63
VPS53Q5VIR6 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS53Q5VIR6 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC19■□□□□ 0.63
VPS53Q5VIR6 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
VPS53Q5VIR6 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS53Q5VIR6 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
VPS53Q5VIR6 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC19■□□□□ 0.63
VPS53Q5VIR6 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC19■□□□□ 0.63
VPS53Q5VIR6 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC19■□□□□ 0.63
VPS53Q5VIR6 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC19■□□□□ 0.63
VPS53Q5VIR6 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
VPS53Q5VIR6 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
VPS53Q5VIR6 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC19■□□□□ 0.63
VPS53Q5VIR6 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
VPS53Q5VIR6 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
VPS53Q5VIR6 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS53Q5VIR6 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC19■□□□□ 0.63
VPS53Q5VIR6 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC19■□□□□ 0.63
VPS53Q5VIR6 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC19■□□□□ 0.63
VPS53Q5VIR6 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS53Q5VIR6 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC19■□□□□ 0.63
VPS53Q5VIR6 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
VPS53Q5VIR6 RAB35-202ENST00000534951 939 ntTSL 2 BASIC19■□□□□ 0.63
VPS53Q5VIR6 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC19■□□□□ 0.63
VPS53Q5VIR6 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC19■□□□□ 0.63
VPS53Q5VIR6 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
VPS53Q5VIR6 SSH2-210ENST00000582084 560 ntTSL 3 BASIC19■□□□□ 0.63
VPS53Q5VIR6 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
VPS53Q5VIR6 LINC01115-203ENST00000606068 577 ntBASIC19■□□□□ 0.63
VPS53Q5VIR6 TEX48-202ENST00000612244 662 ntTSL 3 BASIC19■□□□□ 0.63
VPS53Q5VIR6 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC19■□□□□ 0.63
VPS53Q5VIR6 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS53Q5VIR6 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC19■□□□□ 0.63
VPS53Q5VIR6 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS53Q5VIR6 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS53Q5VIR6 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
VPS53Q5VIR6 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC19■□□□□ 0.63
VPS53Q5VIR6 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
VPS53Q5VIR6 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC19■□□□□ 0.63
VPS53Q5VIR6 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC19■□□□□ 0.63
VPS53Q5VIR6 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC19■□□□□ 0.63
VPS53Q5VIR6 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS53Q5VIR6 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
VPS53Q5VIR6 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC19■□□□□ 0.63
VPS53Q5VIR6 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS53Q5VIR6 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS53Q5VIR6 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC18.99■□□□□ 0.63
VPS53Q5VIR6 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
VPS53Q5VIR6 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC18.99■□□□□ 0.63
VPS53Q5VIR6 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS53Q5VIR6 AC136621.1-201ENST00000624017 2304 ntBASIC18.99■□□□□ 0.63
VPS53Q5VIR6 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
VPS53Q5VIR6 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC18.99■□□□□ 0.63
VPS53Q5VIR6 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC18.99■□□□□ 0.63
VPS53Q5VIR6 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS53Q5VIR6 KRT18P64-201ENST00000434946 1219 ntBASIC18.99■□□□□ 0.63
VPS53Q5VIR6 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC18.99■□□□□ 0.63
VPS53Q5VIR6 ZNF890P-202ENST00000530367 1156 ntBASIC18.99■□□□□ 0.63
VPS53Q5VIR6 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC18.99■□□□□ 0.63
VPS53Q5VIR6 AC063926.3-201ENST00000624734 5658 ntBASIC18.99■□□□□ 0.63
VPS53Q5VIR6 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
VPS53Q5VIR6 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms