Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC14.12□□□□□ -0.15
RNFT1Q5M7Z0 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
RNFT1Q5M7Z0 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
RNFT1Q5M7Z0 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
RNFT1Q5M7Z0 LINC02447-202ENST00000501888 2146 ntBASIC14.12□□□□□ -0.15
RNFT1Q5M7Z0 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RNFT1Q5M7Z0 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
RNFT1Q5M7Z0 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
RNFT1Q5M7Z0 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RNFT1Q5M7Z0 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC14.12□□□□□ -0.15
RNFT1Q5M7Z0 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC14.12□□□□□ -0.15
RNFT1Q5M7Z0 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RNFT1Q5M7Z0 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 POLL-217ENST00000628479 1953 ntTSL 5 BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 TEX30-203ENST00000376022 828 ntTSL 2 BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 RPL7P3-201ENST00000441388 714 ntBASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 AL355864.2-201ENST00000447420 863 ntBASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 AC007551.1-201ENST00000457394 519 ntBASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 FTH1P14-201ENST00000482930 551 ntBASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 AL583810.1-201ENST00000553344 1045 ntBASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 IFT20-206ENST00000578122 834 ntTSL 2 BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 IFT20-208ENST00000578985 831 ntTSL 3 BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 AP003680.1-201ENST00000598970 3660 ntBASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 AC244669.2-201ENST00000612320 853 ntBASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
RNFT1Q5M7Z0 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 CSF2RBP1-201ENST00000447905 391 ntBASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 AC022494.1-201ENST00000466044 728 ntBASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 GAPDHP40-201ENST00000505218 1006 ntBASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 AP000812.2-201ENST00000538934 718 ntBASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC14.1□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 71.4 ms