Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC13.18□□□□□ -0.3
PDLIM3Q53GG5 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC13.18□□□□□ -0.3
PDLIM3Q53GG5 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
PDLIM3Q53GG5 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
PDLIM3Q53GG5 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
PDLIM3Q53GG5 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC13.18□□□□□ -0.3
PDLIM3Q53GG5 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
PDLIM3Q53GG5 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC13.18□□□□□ -0.3
PDLIM3Q53GG5 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
PDLIM3Q53GG5 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
PDLIM3Q53GG5 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
PDLIM3Q53GG5 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC13.18□□□□□ -0.3
PDLIM3Q53GG5 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
PDLIM3Q53GG5 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
PDLIM3Q53GG5 ST20-AS1-201ENST00000560255 4223 ntBASIC13.18□□□□□ -0.3
PDLIM3Q53GG5 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
PDLIM3Q53GG5 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC13.18□□□□□ -0.3
PDLIM3Q53GG5 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 RAC2-204ENST00000406508 893 ntTSL 5 BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 RN7SL692P-201ENST00000464677 288 ntBASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 MIR3909-201ENST00000579518 119 ntBASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 IFT20-216ENST00000588477 774 ntTSL 5 BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 AC092919.2-201ENST00000623631 1645 ntBASIC13.17□□□□□ -0.3
PDLIM3Q53GG5 U82695.1-201ENST00000635752 1889 ntBASIC13.16□□□□□ -0.3
PDLIM3Q53GG5 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
PDLIM3Q53GG5 AC092850.2-201ENST00000623821 2697 ntBASIC13.16□□□□□ -0.3
PDLIM3Q53GG5 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
PDLIM3Q53GG5 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
PDLIM3Q53GG5 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
PDLIM3Q53GG5 AC005622.1-201ENST00000636801 1703 ntBASIC13.16□□□□□ -0.3
PDLIM3Q53GG5 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC13.16□□□□□ -0.3
PDLIM3Q53GG5 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
PDLIM3Q53GG5 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC13.16□□□□□ -0.3
PDLIM3Q53GG5 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
PDLIM3Q53GG5 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
PDLIM3Q53GG5 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
PDLIM3Q53GG5 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC13.16□□□□□ -0.3
PDLIM3Q53GG5 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
PDLIM3Q53GG5 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
PDLIM3Q53GG5 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC13.16□□□□□ -0.3
PDLIM3Q53GG5 AC006058.4-201ENST00000624016 1670 ntBASIC13.16□□□□□ -0.3
PDLIM3Q53GG5 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
PDLIM3Q53GG5 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC13.16□□□□□ -0.3
PDLIM3Q53GG5 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC13.16□□□□□ -0.3
PDLIM3Q53GG5 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
PDLIM3Q53GG5 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
PDLIM3Q53GG5 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC13.16□□□□□ -0.3
PDLIM3Q53GG5 DPM2-202ENST00000373110 738 ntTSL 2 BASIC13.16□□□□□ -0.3
PDLIM3Q53GG5 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC13.16□□□□□ -0.3
PDLIM3Q53GG5 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC13.16□□□□□ -0.3
PDLIM3Q53GG5 VMO1-203ENST00000416307 712 ntTSL 2 BASIC13.16□□□□□ -0.3
PDLIM3Q53GG5 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC13.16□□□□□ -0.3
PDLIM3Q53GG5 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
PDLIM3Q53GG5 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC13.16□□□□□ -0.3
PDLIM3Q53GG5 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC13.16□□□□□ -0.3
PDLIM3Q53GG5 RPS15P9-201ENST00000494093 319 ntBASIC13.16□□□□□ -0.3
PDLIM3Q53GG5 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC13.16□□□□□ -0.3
PDLIM3Q53GG5 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC13.16□□□□□ -0.3
PDLIM3Q53GG5 AC004790.2-201ENST00000623588 572 ntBASIC13.16□□□□□ -0.3
PDLIM3Q53GG5 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC13.16□□□□□ -0.3
PDLIM3Q53GG5 AC009093.7-201ENST00000623853 1223 ntBASIC13.16□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms