Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 SUOX-214ENST00000551841 906 ntTSL 3 BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 MIR5189-201ENST00000577370 114 ntBASIC15.18■□□□□ 0.02
COL28A1Q2UY09 RN7SL560P-201ENST00000577943 264 ntBASIC15.18■□□□□ 0.02
COL28A1Q2UY09 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC15.18■□□□□ 0.02
COL28A1Q2UY09 AC020765.3-201ENST00000613051 740 ntBASIC15.18■□□□□ 0.02
COL28A1Q2UY09 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 KRT8P12-202ENST00000472924 1397 ntBASIC15.17■□□□□ 0.02
COL28A1Q2UY09 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 MGST3-203ENST00000367885 680 ntTSL 2 BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 ARTN-209ENST00000479128 471 ntTSL 3 BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 AL022328.3-201ENST00000607943 679 ntBASIC15.17■□□□□ 0.02
COL28A1Q2UY09 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 AC079328.2-201ENST00000561241 3354 ntBASIC15.17■□□□□ 0.02
COL28A1Q2UY09 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 GGT4P-201ENST00000623672 1708 ntBASIC15.17■□□□□ 0.02
COL28A1Q2UY09 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL28A1Q2UY09 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC15.16■□□□□ 0.02
COL28A1Q2UY09 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms