Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC16.67■□□□□ 0.26
LIG3P49916 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LIG3P49916 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIG3P49916 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
LIG3P49916 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.67■□□□□ 0.26
LIG3P49916 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC16.67■□□□□ 0.26
LIG3P49916 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIG3P49916 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIG3P49916 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIG3P49916 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
LIG3P49916 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
LIG3P49916 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LIG3P49916 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LIG3P49916 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIG3P49916 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC16.66■□□□□ 0.26
LIG3P49916 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LIG3P49916 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIG3P49916 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LIG3P49916 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIG3P49916 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC16.66■□□□□ 0.26
LIG3P49916 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC16.66■□□□□ 0.26
LIG3P49916 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC16.66■□□□□ 0.26
LIG3P49916 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC16.66■□□□□ 0.26
LIG3P49916 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
LIG3P49916 LBH-203ENST00000404397 543 ntTSL 4 BASIC16.66■□□□□ 0.26
LIG3P49916 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC16.66■□□□□ 0.26
LIG3P49916 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC16.66■□□□□ 0.26
LIG3P49916 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LIG3P49916 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC16.66■□□□□ 0.26
LIG3P49916 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
LIG3P49916 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIG3P49916 AC027612.4-201ENST00000605371 583 ntBASIC16.66■□□□□ 0.26
LIG3P49916 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC16.66■□□□□ 0.26
LIG3P49916 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC16.66■□□□□ 0.26
LIG3P49916 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC16.66■□□□□ 0.26
LIG3P49916 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC16.66■□□□□ 0.26
LIG3P49916 SNX33P1-201ENST00000592116 1762 ntBASIC16.66■□□□□ 0.26
LIG3P49916 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC16.66■□□□□ 0.26
LIG3P49916 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIG3P49916 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
LIG3P49916 KRT18P28-201ENST00000453838 1332 ntBASIC16.66■□□□□ 0.26
LIG3P49916 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC16.66■□□□□ 0.26
LIG3P49916 AL109954.1-202ENST00000564051 2148 ntBASIC16.66■□□□□ 0.26
LIG3P49916 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC16.66■□□□□ 0.26
LIG3P49916 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
LIG3P49916 AC016027.1-202ENST00000607927 1699 ntBASIC16.65■□□□□ 0.26
LIG3P49916 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC16.65■□□□□ 0.26
LIG3P49916 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LIG3P49916 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIG3P49916 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIG3P49916 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC16.65■□□□□ 0.26
LIG3P49916 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIG3P49916 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIG3P49916 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIG3P49916 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
LIG3P49916 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIG3P49916 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LIG3P49916 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC16.65■□□□□ 0.26
LIG3P49916 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
LIG3P49916 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
LIG3P49916 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
LIG3P49916 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIG3P49916 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIG3P49916 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIG3P49916 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.65■□□□□ 0.26
LIG3P49916 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC16.65■□□□□ 0.26
LIG3P49916 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC16.65■□□□□ 0.26
LIG3P49916 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LIG3P49916 AL592309.1-201ENST00000443127 649 ntBASIC16.65■□□□□ 0.26
LIG3P49916 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LIG3P49916 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
LIG3P49916 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC16.65■□□□□ 0.26
LIG3P49916 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC16.65■□□□□ 0.26
LIG3P49916 INO80E-210ENST00000567705 880 ntTSL 3 BASIC16.65■□□□□ 0.26
LIG3P49916 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIG3P49916 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC16.65■□□□□ 0.26
LIG3P49916 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC16.65■□□□□ 0.26
LIG3P49916 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC16.65■□□□□ 0.26
LIG3P49916 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
LIG3P49916 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
LIG3P49916 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIG3P49916 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LIG3P49916 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIG3P49916 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LIG3P49916 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC16.65■□□□□ 0.26
LIG3P49916 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC16.65■□□□□ 0.26
LIG3P49916 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC16.65■□□□□ 0.26
LIG3P49916 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIG3P49916 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC16.65■□□□□ 0.26
LIG3P49916 CICP23-201ENST00000605013 2741 ntBASIC16.65■□□□□ 0.26
LIG3P49916 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIG3P49916 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIG3P49916 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.65■□□□□ 0.26
LIG3P49916 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC16.65■□□□□ 0.26
LIG3P49916 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIG3P49916 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC16.65■□□□□ 0.26
LIG3P49916 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LIG3P49916 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC16.65■□□□□ 0.26
LIG3P49916 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC16.65■□□□□ 0.26
LIG3P49916 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 73.6 ms