Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC17.25■□□□□ 0.35
HTTP42858 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC17.24■□□□□ 0.35
HTTP42858 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HTTP42858 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
HTTP42858 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HTTP42858 RPL18AP3-201ENST00000462885 528 ntBASIC17.24■□□□□ 0.35
HTTP42858 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
HTTP42858 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC17.24■□□□□ 0.35
HTTP42858 SAMD11P1-201ENST00000571429 661 ntBASIC17.24■□□□□ 0.35
HTTP42858 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC17.24■□□□□ 0.35
HTTP42858 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
HTTP42858 AMT-204ENST00000427987 1646 ntTSL 5 BASIC17.24■□□□□ 0.35
HTTP42858 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HTTP42858 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
HTTP42858 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
HTTP42858 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HTTP42858 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HTTP42858 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
HTTP42858 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
HTTP42858 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HTTP42858 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HTTP42858 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC17.24■□□□□ 0.35
HTTP42858 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC17.24■□□□□ 0.35
HTTP42858 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC17.24■□□□□ 0.35
HTTP42858 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC17.24■□□□□ 0.35
HTTP42858 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
HTTP42858 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HTTP42858 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HTTP42858 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
HTTP42858 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HTTP42858 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC17.24■□□□□ 0.35
HTTP42858 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC17.23■□□□□ 0.35
HTTP42858 AC114812.1-204ENST00000449669 728 ntBASIC17.23■□□□□ 0.35
HTTP42858 AL353637.1-201ENST00000451571 732 ntBASIC17.23■□□□□ 0.35
HTTP42858 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC17.23■□□□□ 0.35
HTTP42858 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
HTTP42858 MIR5196-201ENST00000578146 115 ntBASIC17.23■□□□□ 0.35
HTTP42858 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HTTP42858 AL157791.1-201ENST00000553667 1699 ntBASIC17.23■□□□□ 0.35
HTTP42858 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC17.23■□□□□ 0.35
HTTP42858 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC17.23■□□□□ 0.35
HTTP42858 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
HTTP42858 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HTTP42858 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC17.23■□□□□ 0.35
HTTP42858 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
HTTP42858 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HTTP42858 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
HTTP42858 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HTTP42858 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC17.23■□□□□ 0.35
HTTP42858 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
HTTP42858 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC17.23■□□□□ 0.35
HTTP42858 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HTTP42858 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HTTP42858 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
HTTP42858 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC17.23■□□□□ 0.35
HTTP42858 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HTTP42858 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC17.23■□□□□ 0.35
HTTP42858 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
HTTP42858 RN7SL67P-201ENST00000492147 296 ntBASIC17.23■□□□□ 0.35
HTTP42858 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC17.23■□□□□ 0.35
HTTP42858 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC17.23■□□□□ 0.35
HTTP42858 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC17.23■□□□□ 0.35
HTTP42858 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC17.23■□□□□ 0.35
HTTP42858 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
HTTP42858 PLS3-210ENST00000626746 216 ntTSL 4 BASIC17.23■□□□□ 0.35
HTTP42858 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HTTP42858 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HTTP42858 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HTTP42858 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HTTP42858 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HTTP42858 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
HTTP42858 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
HTTP42858 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HTTP42858 AC010141.1-201ENST00000411585 623 ntBASIC17.22■□□□□ 0.35
HTTP42858 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HTTP42858 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC17.22■□□□□ 0.35
HTTP42858 RBM8B-201ENST00000555532 525 ntBASIC17.22■□□□□ 0.35
HTTP42858 AC005618.3-201ENST00000624928 458 ntBASIC17.22■□□□□ 0.35
HTTP42858 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
HTTP42858 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
HTTP42858 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HTTP42858 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HTTP42858 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
HTTP42858 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HTTP42858 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HTTP42858 ALG1L13P-202ENST00000519320 584 ntBASIC17.22■□□□□ 0.35
HTTP42858 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HTTP42858 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HTTP42858 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
HTTP42858 AP003680.1-201ENST00000598970 3660 ntBASIC17.22■□□□□ 0.35
HTTP42858 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC17.22■□□□□ 0.35
HTTP42858 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC17.22■□□□□ 0.35
HTTP42858 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC17.21■□□□□ 0.35
HTTP42858 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC17.21■□□□□ 0.35
HTTP42858 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC17.21■□□□□ 0.35
HTTP42858 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HTTP42858 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HTTP42858 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
HTTP42858 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HTTP42858 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms