Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL18A1P39060 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
COL18A1P39060 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL18A1P39060 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC20.22■□□□□ 0.83
COL18A1P39060 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC20.22■□□□□ 0.83
COL18A1P39060 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
COL18A1P39060 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC20.21■□□□□ 0.83
COL18A1P39060 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
COL18A1P39060 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL18A1P39060 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL18A1P39060 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL18A1P39060 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL18A1P39060 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC20.21■□□□□ 0.83
COL18A1P39060 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL18A1P39060 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC20.21■□□□□ 0.83
COL18A1P39060 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL18A1P39060 AC138696.2-201ENST00000607376 223 ntBASIC20.21■□□□□ 0.83
COL18A1P39060 AC002472.3-201ENST00000640124 621 ntBASIC20.21■□□□□ 0.83
COL18A1P39060 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL18A1P39060 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
COL18A1P39060 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
COL18A1P39060 AC006480.2-201ENST00000609770 1337 ntBASIC20.21■□□□□ 0.83
COL18A1P39060 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
COL18A1P39060 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC20.21■□□□□ 0.83
COL18A1P39060 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC20.21■□□□□ 0.83
COL18A1P39060 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL18A1P39060 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC20.21■□□□□ 0.83
COL18A1P39060 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
COL18A1P39060 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL18A1P39060 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL18A1P39060 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
COL18A1P39060 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC20.21■□□□□ 0.83
COL18A1P39060 CMC1-204ENST00000423894 549 ntTSL 2 BASIC20.21■□□□□ 0.83
COL18A1P39060 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC20.21■□□□□ 0.83
COL18A1P39060 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL18A1P39060 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC20.21■□□□□ 0.83
COL18A1P39060 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC20.21■□□□□ 0.83
COL18A1P39060 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL18A1P39060 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC20.2■□□□□ 0.82
COL18A1P39060 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC20.2■□□□□ 0.82
COL18A1P39060 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL18A1P39060 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC20.2■□□□□ 0.82
COL18A1P39060 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL18A1P39060 SHC1P1-201ENST00000425230 1745 ntBASIC20.2■□□□□ 0.82
COL18A1P39060 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC20.2■□□□□ 0.82
COL18A1P39060 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL18A1P39060 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
COL18A1P39060 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC20.2■□□□□ 0.82
COL18A1P39060 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL18A1P39060 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL18A1P39060 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC20.2■□□□□ 0.82
COL18A1P39060 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL18A1P39060 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC20.2■□□□□ 0.82
COL18A1P39060 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL18A1P39060 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL18A1P39060 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC20.2■□□□□ 0.82
COL18A1P39060 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC20.2■□□□□ 0.82
COL18A1P39060 AC011742.3-201ENST00000439053 820 ntBASIC20.2■□□□□ 0.82
COL18A1P39060 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC20.2■□□□□ 0.82
COL18A1P39060 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL18A1P39060 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL18A1P39060 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC20.2■□□□□ 0.82
COL18A1P39060 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC20.2■□□□□ 0.82
COL18A1P39060 MBP-227ENST00000526111 581 ntTSL 4 BASIC20.2■□□□□ 0.82
COL18A1P39060 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC20.2■□□□□ 0.82
COL18A1P39060 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC20.2■□□□□ 0.82
COL18A1P39060 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL18A1P39060 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL18A1P39060 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL18A1P39060 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
COL18A1P39060 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL18A1P39060 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL18A1P39060 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC20.19■□□□□ 0.82
COL18A1P39060 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
COL18A1P39060 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
COL18A1P39060 GCK-209ENST00000616242 2260 ntTSL 5 BASIC20.19■□□□□ 0.82
COL18A1P39060 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL18A1P39060 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL18A1P39060 ISCA2P1-201ENST00000425548 448 ntBASIC20.19■□□□□ 0.82
COL18A1P39060 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC20.19■□□□□ 0.82
COL18A1P39060 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL18A1P39060 AL353637.1-201ENST00000451571 732 ntBASIC20.19■□□□□ 0.82
COL18A1P39060 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL18A1P39060 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL18A1P39060 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL18A1P39060 AC004923.1-202ENST00000642106 209 ntBASIC20.19■□□□□ 0.82
COL18A1P39060 AC011840.2-201ENST00000563063 1520 ntBASIC20.19■□□□□ 0.82
COL18A1P39060 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL18A1P39060 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL18A1P39060 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL18A1P39060 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL18A1P39060 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL18A1P39060 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL18A1P39060 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC20.19■□□□□ 0.82
COL18A1P39060 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
COL18A1P39060 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL18A1P39060 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL18A1P39060 REXO1L4P-201ENST00000605109 1937 ntBASIC20.19■□□□□ 0.82
COL18A1P39060 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL18A1P39060 AL157414.3-201ENST00000624276 1954 ntBASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms