Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL8A1P27658 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL8A1P27658 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL8A1P27658 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
COL8A1P27658 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC13.73□□□□□ -0.21
COL8A1P27658 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC13.73□□□□□ -0.21
COL8A1P27658 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL8A1P27658 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
COL8A1P27658 AC006480.2-201ENST00000609770 1337 ntBASIC13.73□□□□□ -0.21
COL8A1P27658 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL8A1P27658 NKILA-202ENST00000614771 2598 ntBASIC13.73□□□□□ -0.21
COL8A1P27658 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL8A1P27658 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL8A1P27658 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
COL8A1P27658 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC13.73□□□□□ -0.21
COL8A1P27658 MIR769-201ENST00000390225 118 ntBASIC13.73□□□□□ -0.21
COL8A1P27658 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC13.73□□□□□ -0.21
COL8A1P27658 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL8A1P27658 AL590640.2-201ENST00000457038 527 ntBASIC13.73□□□□□ -0.21
COL8A1P27658 RN7SL818P-201ENST00000485099 259 ntBASIC13.73□□□□□ -0.21
COL8A1P27658 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC13.73□□□□□ -0.21
COL8A1P27658 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC13.73□□□□□ -0.21
COL8A1P27658 MIR3147-201ENST00000577811 66 ntBASIC13.73□□□□□ -0.21
COL8A1P27658 RN7SL555P-201ENST00000584742 339 ntBASIC13.73□□□□□ -0.21
COL8A1P27658 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
COL8A1P27658 AL133499.1-201ENST00000596207 608 ntBASIC13.73□□□□□ -0.21
COL8A1P27658 RN7SL725P-201ENST00000606439 259 ntBASIC13.73□□□□□ -0.21
COL8A1P27658 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
COL8A1P27658 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC13.73□□□□□ -0.21
COL8A1P27658 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL8A1P27658 AC079336.7-201ENST00000623428 1078 ntBASIC13.73□□□□□ -0.21
COL8A1P27658 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL8A1P27658 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
COL8A1P27658 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL8A1P27658 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL8A1P27658 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL8A1P27658 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL8A1P27658 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
COL8A1P27658 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
COL8A1P27658 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
COL8A1P27658 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC13.73□□□□□ -0.21
COL8A1P27658 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL8A1P27658 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL8A1P27658 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC13.73□□□□□ -0.21
COL8A1P27658 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL8A1P27658 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL8A1P27658 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL8A1P27658 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL8A1P27658 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL8A1P27658 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL8A1P27658 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
COL8A1P27658 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
COL8A1P27658 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL8A1P27658 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL8A1P27658 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
COL8A1P27658 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
COL8A1P27658 AC011676.5-201ENST00000624864 2660 ntBASIC13.72□□□□□ -0.21
COL8A1P27658 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC13.72□□□□□ -0.21
COL8A1P27658 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL8A1P27658 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL8A1P27658 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
COL8A1P27658 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL8A1P27658 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
COL8A1P27658 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
COL8A1P27658 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
COL8A1P27658 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL8A1P27658 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
COL8A1P27658 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC13.72□□□□□ -0.21
COL8A1P27658 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
COL8A1P27658 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC13.72□□□□□ -0.21
COL8A1P27658 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
COL8A1P27658 AC022137.2-201ENST00000503482 481 ntBASIC13.72□□□□□ -0.21
COL8A1P27658 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC13.72□□□□□ -0.21
COL8A1P27658 IQSEC3P1-201ENST00000538799 536 ntBASIC13.72□□□□□ -0.21
COL8A1P27658 PRKXP1-201ENST00000561423 1122 ntBASIC13.72□□□□□ -0.21
COL8A1P27658 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
COL8A1P27658 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
COL8A1P27658 LINC00511-205ENST00000578206 908 ntTSL 3 BASIC13.72□□□□□ -0.21
COL8A1P27658 CYGB-203ENST00000589145 788 ntTSL 3 BASIC13.72□□□□□ -0.21
COL8A1P27658 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC13.72□□□□□ -0.21
COL8A1P27658 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC13.72□□□□□ -0.21
COL8A1P27658 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL8A1P27658 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL8A1P27658 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
COL8A1P27658 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL8A1P27658 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL8A1P27658 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL8A1P27658 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL8A1P27658 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC13.71□□□□□ -0.21
COL8A1P27658 AC022211.2-201ENST00000585075 2527 ntBASIC13.71□□□□□ -0.21
COL8A1P27658 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC13.71□□□□□ -0.21
COL8A1P27658 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL8A1P27658 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL8A1P27658 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
COL8A1P27658 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL8A1P27658 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL8A1P27658 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
COL8A1P27658 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL8A1P27658 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL8A1P27658 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 60.4 ms