Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VSX1Q9NZR4 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC20.79■□□□□ 0.92
VSX1Q9NZR4 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VSX1Q9NZR4 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VSX1Q9NZR4 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC20.79■□□□□ 0.92
VSX1Q9NZR4 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC20.78■□□□□ 0.92
VSX1Q9NZR4 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VSX1Q9NZR4 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VSX1Q9NZR4 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VSX1Q9NZR4 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC20.78■□□□□ 0.92
VSX1Q9NZR4 DUX4L9-201ENST00000449051 1259 ntBASIC20.78■□□□□ 0.92
VSX1Q9NZR4 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
VSX1Q9NZR4 MIR6765-201ENST00000614092 87 ntBASIC20.78■□□□□ 0.92
VSX1Q9NZR4 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC20.78■□□□□ 0.92
VSX1Q9NZR4 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VSX1Q9NZR4 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VSX1Q9NZR4 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VSX1Q9NZR4 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VSX1Q9NZR4 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC20.77■□□□□ 0.92
VSX1Q9NZR4 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VSX1Q9NZR4 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC20.77■□□□□ 0.92
VSX1Q9NZR4 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
VSX1Q9NZR4 U85056.1-201ENST00000616429 682 ntBASIC20.77■□□□□ 0.92
VSX1Q9NZR4 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
VSX1Q9NZR4 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VSX1Q9NZR4 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC20.77■□□□□ 0.91
VSX1Q9NZR4 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
VSX1Q9NZR4 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
VSX1Q9NZR4 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC20.76■□□□□ 0.91
VSX1Q9NZR4 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC20.76■□□□□ 0.91
VSX1Q9NZR4 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
VSX1Q9NZR4 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
VSX1Q9NZR4 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VSX1Q9NZR4 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC20.75■□□□□ 0.91
VSX1Q9NZR4 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
VSX1Q9NZR4 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VSX1Q9NZR4 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VSX1Q9NZR4 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VSX1Q9NZR4 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VSX1Q9NZR4 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
VSX1Q9NZR4 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
VSX1Q9NZR4 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VSX1Q9NZR4 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VSX1Q9NZR4 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC20.74■□□□□ 0.91
VSX1Q9NZR4 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VSX1Q9NZR4 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
VSX1Q9NZR4 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VSX1Q9NZR4 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC20.73■□□□□ 0.91
VSX1Q9NZR4 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VSX1Q9NZR4 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VSX1Q9NZR4 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VSX1Q9NZR4 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VSX1Q9NZR4 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
VSX1Q9NZR4 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC20.73■□□□□ 0.91
VSX1Q9NZR4 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
VSX1Q9NZR4 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VSX1Q9NZR4 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VSX1Q9NZR4 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VSX1Q9NZR4 AC004812.2-201ENST00000611079 2094 ntBASIC20.73■□□□□ 0.91
VSX1Q9NZR4 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
VSX1Q9NZR4 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC20.72■□□□□ 0.91
VSX1Q9NZR4 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VSX1Q9NZR4 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VSX1Q9NZR4 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC20.72■□□□□ 0.91
VSX1Q9NZR4 AC129492.7-201ENST00000622992 756 ntBASIC20.72■□□□□ 0.91
VSX1Q9NZR4 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VSX1Q9NZR4 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
VSX1Q9NZR4 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.72■□□□□ 0.91
VSX1Q9NZR4 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
VSX1Q9NZR4 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC20.71■□□□□ 0.91
VSX1Q9NZR4 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
VSX1Q9NZR4 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VSX1Q9NZR4 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC20.71■□□□□ 0.91
VSX1Q9NZR4 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VSX1Q9NZR4 AL592295.1-201ENST00000400984 884 ntBASIC20.71■□□□□ 0.91
VSX1Q9NZR4 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VSX1Q9NZR4 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC20.71■□□□□ 0.91
VSX1Q9NZR4 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC20.7■□□□□ 0.9
VSX1Q9NZR4 KRT18P60-201ENST00000312876 1297 ntBASIC20.7■□□□□ 0.9
VSX1Q9NZR4 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VSX1Q9NZR4 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VSX1Q9NZR4 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VSX1Q9NZR4 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
VSX1Q9NZR4 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC20.7■□□□□ 0.9
VSX1Q9NZR4 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC20.7■□□□□ 0.9
VSX1Q9NZR4 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VSX1Q9NZR4 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VSX1Q9NZR4 AC090877.2-201ENST00000558441 1738 ntBASIC20.7■□□□□ 0.9
VSX1Q9NZR4 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC20.7■□□□□ 0.9
VSX1Q9NZR4 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC20.69■□□□□ 0.9
VSX1Q9NZR4 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC20.69■□□□□ 0.9
VSX1Q9NZR4 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VSX1Q9NZR4 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VSX1Q9NZR4 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VSX1Q9NZR4 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
VSX1Q9NZR4 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
VSX1Q9NZR4 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VSX1Q9NZR4 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VSX1Q9NZR4 SHD-204ENST00000599689 1729 ntTSL 5 BASIC20.69■□□□□ 0.9
VSX1Q9NZR4 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms