Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC23.38■■□□□ 1.33
TM9SF3Q9HD45 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC23.38■■□□□ 1.33
TM9SF3Q9HD45 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
TM9SF3Q9HD45 EXOG-217ENST00000630638 197 ntTSL 5 BASIC23.38■■□□□ 1.33
TM9SF3Q9HD45 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC23.38■■□□□ 1.33
TM9SF3Q9HD45 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC23.38■■□□□ 1.33
TM9SF3Q9HD45 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
TM9SF3Q9HD45 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC23.38■■□□□ 1.33
TM9SF3Q9HD45 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
TM9SF3Q9HD45 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
TM9SF3Q9HD45 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
TM9SF3Q9HD45 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC23.37■■□□□ 1.33
TM9SF3Q9HD45 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC23.37■■□□□ 1.33
TM9SF3Q9HD45 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC23.37■■□□□ 1.33
TM9SF3Q9HD45 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC23.37■■□□□ 1.33
TM9SF3Q9HD45 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC23.37■■□□□ 1.33
TM9SF3Q9HD45 AL356740.2-201ENST00000601559 647 ntBASIC23.37■■□□□ 1.33
TM9SF3Q9HD45 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC23.37■■□□□ 1.33
TM9SF3Q9HD45 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
TM9SF3Q9HD45 RALB-208ENST00000631312 311 ntTSL 5 BASIC23.37■■□□□ 1.33
TM9SF3Q9HD45 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC23.37■■□□□ 1.33
TM9SF3Q9HD45 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC23.37■■□□□ 1.33
TM9SF3Q9HD45 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC23.37■■□□□ 1.33
TM9SF3Q9HD45 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
TM9SF3Q9HD45 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC23.36■■□□□ 1.33
TM9SF3Q9HD45 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
TM9SF3Q9HD45 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC23.36■■□□□ 1.33
TM9SF3Q9HD45 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC23.36■■□□□ 1.33
TM9SF3Q9HD45 CLTA-210ENST00000540080 989 ntTSL 2 BASIC23.36■■□□□ 1.33
TM9SF3Q9HD45 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC23.36■■□□□ 1.33
TM9SF3Q9HD45 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
TM9SF3Q9HD45 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC23.36■■□□□ 1.33
TM9SF3Q9HD45 AF131216.4-201ENST00000638924 1588 ntBASIC23.35■■□□□ 1.33
TM9SF3Q9HD45 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC23.35■■□□□ 1.33
TM9SF3Q9HD45 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
TM9SF3Q9HD45 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
TM9SF3Q9HD45 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC23.35■■□□□ 1.33
TM9SF3Q9HD45 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC23.35■■□□□ 1.33
TM9SF3Q9HD45 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC23.35■■□□□ 1.33
TM9SF3Q9HD45 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
TM9SF3Q9HD45 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC23.35■■□□□ 1.33
TM9SF3Q9HD45 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC23.35■■□□□ 1.33
TM9SF3Q9HD45 FOXO3B-201ENST00000395675 1928 ntBASIC23.35■■□□□ 1.33
TM9SF3Q9HD45 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC23.35■■□□□ 1.33
TM9SF3Q9HD45 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
TM9SF3Q9HD45 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
TM9SF3Q9HD45 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC23.34■■□□□ 1.33
TM9SF3Q9HD45 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC23.34■■□□□ 1.33
TM9SF3Q9HD45 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
TM9SF3Q9HD45 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
TM9SF3Q9HD45 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
TM9SF3Q9HD45 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC23.33■■□□□ 1.33
TM9SF3Q9HD45 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
TM9SF3Q9HD45 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
TM9SF3Q9HD45 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
TM9SF3Q9HD45 AC145676.1-201ENST00000514988 2004 ntBASIC23.32■■□□□ 1.32
TM9SF3Q9HD45 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
TM9SF3Q9HD45 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
TM9SF3Q9HD45 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC23.32■■□□□ 1.32
TM9SF3Q9HD45 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC23.32■■□□□ 1.32
TM9SF3Q9HD45 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC23.32■■□□□ 1.32
TM9SF3Q9HD45 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
TM9SF3Q9HD45 MIR4466-201ENST00000606121 54 ntBASIC23.32■■□□□ 1.32
TM9SF3Q9HD45 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC23.32■■□□□ 1.32
TM9SF3Q9HD45 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
TM9SF3Q9HD45 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
TM9SF3Q9HD45 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
TM9SF3Q9HD45 AK3-203ENST00000447596 705 ntTSL 2 BASIC23.31■■□□□ 1.32
TM9SF3Q9HD45 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC23.31■■□□□ 1.32
TM9SF3Q9HD45 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC23.31■■□□□ 1.32
TM9SF3Q9HD45 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
TM9SF3Q9HD45 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
TM9SF3Q9HD45 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
TM9SF3Q9HD45 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
TM9SF3Q9HD45 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
TM9SF3Q9HD45 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC23.3■■□□□ 1.32
TM9SF3Q9HD45 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
TM9SF3Q9HD45 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC23.3■■□□□ 1.32
TM9SF3Q9HD45 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
TM9SF3Q9HD45 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
TM9SF3Q9HD45 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
TM9SF3Q9HD45 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC23.29■■□□□ 1.32
TM9SF3Q9HD45 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC23.29■■□□□ 1.32
TM9SF3Q9HD45 CD72-202ENST00000378430 585 ntTSL 3 BASIC23.29■■□□□ 1.32
TM9SF3Q9HD45 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC23.29■■□□□ 1.32
TM9SF3Q9HD45 AC110285.6-201ENST00000617652 491 ntBASIC23.29■■□□□ 1.32
TM9SF3Q9HD45 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC23.29■■□□□ 1.32
TM9SF3Q9HD45 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
TM9SF3Q9HD45 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
TM9SF3Q9HD45 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
TM9SF3Q9HD45 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
TM9SF3Q9HD45 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
TM9SF3Q9HD45 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
TM9SF3Q9HD45 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
TM9SF3Q9HD45 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
TM9SF3Q9HD45 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC23.27■■□□□ 1.32
TM9SF3Q9HD45 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
TM9SF3Q9HD45 QDPR-206ENST00000508623 601 ntTSL 3 BASIC23.27■■□□□ 1.32
TM9SF3Q9HD45 AL512631.2-201ENST00000604634 923 ntBASIC23.27■■□□□ 1.32
TM9SF3Q9HD45 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC23.27■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms