Protein–RNA interactions for Protein: Q9H0F5

RNF38, E3 ubiquitin-protein ligase RNF38, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF38Q9H0F5 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
RNF38Q9H0F5 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
RNF38Q9H0F5 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC24.34■■□□□ 1.49
RNF38Q9H0F5 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC24.34■■□□□ 1.49
RNF38Q9H0F5 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
RNF38Q9H0F5 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC24.34■■□□□ 1.49
RNF38Q9H0F5 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC24.34■■□□□ 1.49
RNF38Q9H0F5 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC24.34■■□□□ 1.49
RNF38Q9H0F5 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC24.34■■□□□ 1.49
RNF38Q9H0F5 CLTA-210ENST00000540080 989 ntTSL 2 BASIC24.34■■□□□ 1.49
RNF38Q9H0F5 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
RNF38Q9H0F5 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
RNF38Q9H0F5 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC24.33■■□□□ 1.49
RNF38Q9H0F5 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC24.33■■□□□ 1.49
RNF38Q9H0F5 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC24.33■■□□□ 1.49
RNF38Q9H0F5 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
RNF38Q9H0F5 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
RNF38Q9H0F5 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC24.33■■□□□ 1.49
RNF38Q9H0F5 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC24.33■■□□□ 1.49
RNF38Q9H0F5 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.48
RNF38Q9H0F5 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC24.32■■□□□ 1.48
RNF38Q9H0F5 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC24.32■■□□□ 1.48
RNF38Q9H0F5 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RNF38Q9H0F5 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC24.32■■□□□ 1.48
RNF38Q9H0F5 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
RNF38Q9H0F5 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC24.31■■□□□ 1.48
RNF38Q9H0F5 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
RNF38Q9H0F5 LSM4-201ENST00000252816 986 ntTSL 2 BASIC24.31■■□□□ 1.48
RNF38Q9H0F5 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC24.31■■□□□ 1.48
RNF38Q9H0F5 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
RNF38Q9H0F5 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
RNF38Q9H0F5 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
RNF38Q9H0F5 MTDHP2-201ENST00000601468 714 ntBASIC24.29■■□□□ 1.48
RNF38Q9H0F5 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC24.29■■□□□ 1.48
RNF38Q9H0F5 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC24.29■■□□□ 1.48
RNF38Q9H0F5 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
RNF38Q9H0F5 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
RNF38Q9H0F5 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
RNF38Q9H0F5 AC008406.3-201ENST00000620001 1374 ntBASIC24.29■■□□□ 1.48
RNF38Q9H0F5 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
RNF38Q9H0F5 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
RNF38Q9H0F5 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC24.28■■□□□ 1.48
RNF38Q9H0F5 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
RNF38Q9H0F5 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC24.28■■□□□ 1.48
RNF38Q9H0F5 CEBPA-AS1-201ENST00000592982 2198 ntBASIC24.27■■□□□ 1.48
RNF38Q9H0F5 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC24.27■■□□□ 1.48
RNF38Q9H0F5 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC24.27■■□□□ 1.48
RNF38Q9H0F5 EXOG-217ENST00000630638 197 ntTSL 5 BASIC24.27■■□□□ 1.48
RNF38Q9H0F5 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC24.27■■□□□ 1.48
RNF38Q9H0F5 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
RNF38Q9H0F5 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC24.26■■□□□ 1.47
RNF38Q9H0F5 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC24.26■■□□□ 1.47
RNF38Q9H0F5 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC24.26■■□□□ 1.47
RNF38Q9H0F5 LBH-205ENST00000407930 756 ntTSL 2 BASIC24.26■■□□□ 1.47
RNF38Q9H0F5 MIR6724-1-201ENST00000616420 92 ntBASIC24.26■■□□□ 1.47
RNF38Q9H0F5 MIR6724-2-201ENST00000616483 92 ntBASIC24.26■■□□□ 1.47
RNF38Q9H0F5 MIR6724-4-201ENST00000617390 92 ntBASIC24.26■■□□□ 1.47
RNF38Q9H0F5 MIR6724-3-201ENST00000622482 92 ntBASIC24.26■■□□□ 1.47
RNF38Q9H0F5 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
RNF38Q9H0F5 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC24.26■■□□□ 1.47
RNF38Q9H0F5 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
RNF38Q9H0F5 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
RNF38Q9H0F5 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC24.25■■□□□ 1.47
RNF38Q9H0F5 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC24.25■■□□□ 1.47
RNF38Q9H0F5 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC24.25■■□□□ 1.47
RNF38Q9H0F5 SNX5-217ENST00000606557 1087 ntBASIC24.25■■□□□ 1.47
RNF38Q9H0F5 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC24.24■■□□□ 1.47
RNF38Q9H0F5 AL117332.1-201ENST00000622628 974 ntBASIC24.24■■□□□ 1.47
RNF38Q9H0F5 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
RNF38Q9H0F5 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
RNF38Q9H0F5 PEMT-206ENST00000435340 960 ntTSL 5 BASIC24.23■■□□□ 1.47
RNF38Q9H0F5 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC24.23■■□□□ 1.47
RNF38Q9H0F5 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC24.23■■□□□ 1.47
RNF38Q9H0F5 TRIR-202ENST00000588213 841 ntTSL 3 BASIC24.23■■□□□ 1.47
RNF38Q9H0F5 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC24.23■■□□□ 1.47
RNF38Q9H0F5 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC24.23■■□□□ 1.47
RNF38Q9H0F5 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
RNF38Q9H0F5 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
RNF38Q9H0F5 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
RNF38Q9H0F5 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC24.22■■□□□ 1.47
RNF38Q9H0F5 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
RNF38Q9H0F5 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
RNF38Q9H0F5 SRR-208ENST00000576848 588 ntTSL 4 BASIC24.22■■□□□ 1.47
RNF38Q9H0F5 MIR3621-201ENST00000580529 85 ntBASIC24.22■■□□□ 1.47
RNF38Q9H0F5 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC24.22■■□□□ 1.47
RNF38Q9H0F5 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC24.21■■□□□ 1.47
RNF38Q9H0F5 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
RNF38Q9H0F5 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC24.21■■□□□ 1.47
RNF38Q9H0F5 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC24.21■■□□□ 1.47
RNF38Q9H0F5 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
RNF38Q9H0F5 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
RNF38Q9H0F5 RPP21-222ENST00000433076 577 ntTSL 2 BASIC24.21■■□□□ 1.47
RNF38Q9H0F5 LSM7-203ENST00000585409 512 ntTSL 2 BASIC24.21■■□□□ 1.47
RNF38Q9H0F5 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC24.21■■□□□ 1.47
RNF38Q9H0F5 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC24.2■■□□□ 1.46
RNF38Q9H0F5 CLTA-206ENST00000466396 695 ntTSL 2 BASIC24.2■■□□□ 1.46
RNF38Q9H0F5 AC131281.2-201ENST00000520478 145 ntBASIC24.2■■□□□ 1.46
RNF38Q9H0F5 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
RNF38Q9H0F5 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC24.2■■□□□ 1.46
RNF38Q9H0F5 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms