Protein–RNA interactions for Protein: Q8WWH5

TRUB1, Probable tRNA pseudouridine synthase 1, humanhuman

Known RBP Predictions only

Length 349 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRUB1Q8WWH5 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
TRUB1Q8WWH5 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
TRUB1Q8WWH5 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
TRUB1Q8WWH5 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
TRUB1Q8WWH5 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
TRUB1Q8WWH5 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
TRUB1Q8WWH5 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
TRUB1Q8WWH5 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
TRUB1Q8WWH5 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC21.32■■□□□ 1
TRUB1Q8WWH5 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRUB1Q8WWH5 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRUB1Q8WWH5 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRUB1Q8WWH5 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC21.32■■□□□ 1
TRUB1Q8WWH5 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC21.32■■□□□ 1
TRUB1Q8WWH5 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
TRUB1Q8WWH5 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
TRUB1Q8WWH5 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRUB1Q8WWH5 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
TRUB1Q8WWH5 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.31■■□□□ 1
TRUB1Q8WWH5 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC21.31■■□□□ 1
TRUB1Q8WWH5 MIR6089-201ENST00000616698 64 ntBASIC21.31■■□□□ 1
TRUB1Q8WWH5 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
TRUB1Q8WWH5 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC21.31■■□□□ 1
TRUB1Q8WWH5 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC21.31■■□□□ 1
TRUB1Q8WWH5 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC21.3■■□□□ 1
TRUB1Q8WWH5 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TRUB1Q8WWH5 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.3■■□□□ 1
TRUB1Q8WWH5 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
TRUB1Q8WWH5 HES6-205ENST00000409356 528 ntTSL 2 BASIC21.3■■□□□ 1
TRUB1Q8WWH5 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC21.3■■□□□ 1
TRUB1Q8WWH5 DUX4L11-201ENST00000611504 1267 ntBASIC21.3■■□□□ 1
TRUB1Q8WWH5 DUX4L12-201ENST00000614593 1267 ntBASIC21.3■■□□□ 1
TRUB1Q8WWH5 DUX4L14-201ENST00000621227 1267 ntBASIC21.3■■□□□ 1
TRUB1Q8WWH5 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC21.3■■□□□ 1
TRUB1Q8WWH5 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC21.3■■□□□ 1
TRUB1Q8WWH5 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC21.29■■□□□ 1
TRUB1Q8WWH5 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRUB1Q8WWH5 C9orf163-202ENST00000624034 2573 ntBASIC21.29■■□□□ 1
TRUB1Q8WWH5 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC21.29■■□□□ 1
TRUB1Q8WWH5 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC21.29■■□□□ 1
TRUB1Q8WWH5 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
TRUB1Q8WWH5 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC21.29■■□□□ 1
TRUB1Q8WWH5 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC21.29■■□□□ 1
TRUB1Q8WWH5 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRUB1Q8WWH5 LSR-205ENST00000427250 1606 ntTSL 2 BASIC21.29■■□□□ 1
TRUB1Q8WWH5 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.28■■□□□ 1
TRUB1Q8WWH5 EFS-203ENST00000429593 2610 ntTSL 2 BASIC21.28■■□□□ 1
TRUB1Q8WWH5 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC21.28■■□□□ 1
TRUB1Q8WWH5 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC21.28■■□□□ 1
TRUB1Q8WWH5 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
TRUB1Q8WWH5 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC21.28■■□□□ 1
TRUB1Q8WWH5 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRUB1Q8WWH5 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21.28■■□□□ 1
TRUB1Q8WWH5 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.28■■□□□ 1
TRUB1Q8WWH5 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC21.28■■□□□ 1
TRUB1Q8WWH5 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC21.27■■□□□ 1
TRUB1Q8WWH5 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
TRUB1Q8WWH5 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
TRUB1Q8WWH5 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.27■■□□□ 1
TRUB1Q8WWH5 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
TRUB1Q8WWH5 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC21.27■■□□□ 1
TRUB1Q8WWH5 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC21.27■■□□□ 1
TRUB1Q8WWH5 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.27■■□□□ 1
TRUB1Q8WWH5 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
TRUB1Q8WWH5 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC21.27■□□□□ 0.99
TRUB1Q8WWH5 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TRUB1Q8WWH5 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRUB1Q8WWH5 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC21.26■□□□□ 0.99
TRUB1Q8WWH5 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TRUB1Q8WWH5 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TRUB1Q8WWH5 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRUB1Q8WWH5 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRUB1Q8WWH5 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRUB1Q8WWH5 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
TRUB1Q8WWH5 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRUB1Q8WWH5 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TRUB1Q8WWH5 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRUB1Q8WWH5 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRUB1Q8WWH5 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TRUB1Q8WWH5 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TRUB1Q8WWH5 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
TRUB1Q8WWH5 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRUB1Q8WWH5 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TRUB1Q8WWH5 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
TRUB1Q8WWH5 SHD-204ENST00000599689 1729 ntTSL 5 BASIC21.24■□□□□ 0.99
TRUB1Q8WWH5 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
TRUB1Q8WWH5 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
TRUB1Q8WWH5 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC21.24■□□□□ 0.99
TRUB1Q8WWH5 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC21.24■□□□□ 0.99
TRUB1Q8WWH5 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TRUB1Q8WWH5 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC21.23■□□□□ 0.99
TRUB1Q8WWH5 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRUB1Q8WWH5 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
TRUB1Q8WWH5 EP400NL-214ENST00000641289 2402 ntBASIC21.23■□□□□ 0.99
TRUB1Q8WWH5 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRUB1Q8WWH5 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC21.23■□□□□ 0.99
TRUB1Q8WWH5 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC21.23■□□□□ 0.99
TRUB1Q8WWH5 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC21.22■□□□□ 0.99
TRUB1Q8WWH5 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
TRUB1Q8WWH5 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms