Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC23.92■■□□□ 1.42
SHROOM3Q8TF72 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC23.92■■□□□ 1.42
SHROOM3Q8TF72 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
SHROOM3Q8TF72 MIR4281-201ENST00000580852 62 ntBASIC23.91■■□□□ 1.42
SHROOM3Q8TF72 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
SHROOM3Q8TF72 AC009299.2-201ENST00000482477 511 ntBASIC23.91■■□□□ 1.42
SHROOM3Q8TF72 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
SHROOM3Q8TF72 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC23.91■■□□□ 1.42
SHROOM3Q8TF72 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
SHROOM3Q8TF72 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
SHROOM3Q8TF72 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
SHROOM3Q8TF72 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC23.9■■□□□ 1.42
SHROOM3Q8TF72 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC23.9■■□□□ 1.42
SHROOM3Q8TF72 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC23.9■■□□□ 1.42
SHROOM3Q8TF72 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC23.9■■□□□ 1.42
SHROOM3Q8TF72 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC23.89■■□□□ 1.42
SHROOM3Q8TF72 LSR-205ENST00000427250 1606 ntTSL 2 BASIC23.89■■□□□ 1.42
SHROOM3Q8TF72 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC23.89■■□□□ 1.42
SHROOM3Q8TF72 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC23.89■■□□□ 1.42
SHROOM3Q8TF72 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
SHROOM3Q8TF72 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.41
SHROOM3Q8TF72 EED-207ENST00000528180 1745 ntTSL 5 BASIC23.89■■□□□ 1.41
SHROOM3Q8TF72 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
SHROOM3Q8TF72 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC23.88■■□□□ 1.41
SHROOM3Q8TF72 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC23.88■■□□□ 1.41
SHROOM3Q8TF72 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
SHROOM3Q8TF72 AC093323.1-202ENST00000635031 2045 ntBASIC23.88■■□□□ 1.41
SHROOM3Q8TF72 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC23.88■■□□□ 1.41
SHROOM3Q8TF72 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
SHROOM3Q8TF72 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC23.88■■□□□ 1.41
SHROOM3Q8TF72 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
SHROOM3Q8TF72 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
SHROOM3Q8TF72 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC23.88■■□□□ 1.41
SHROOM3Q8TF72 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC23.88■■□□□ 1.41
SHROOM3Q8TF72 AC019171.1-201ENST00000601251 1056 ntBASIC23.88■■□□□ 1.41
SHROOM3Q8TF72 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
SHROOM3Q8TF72 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC23.88■■□□□ 1.41
SHROOM3Q8TF72 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
SHROOM3Q8TF72 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
SHROOM3Q8TF72 LINC01124-201ENST00000409786 2117 ntBASIC23.87■■□□□ 1.41
SHROOM3Q8TF72 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
SHROOM3Q8TF72 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
SHROOM3Q8TF72 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
SHROOM3Q8TF72 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC23.86■■□□□ 1.41
SHROOM3Q8TF72 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC23.86■■□□□ 1.41
SHROOM3Q8TF72 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC23.86■■□□□ 1.41
SHROOM3Q8TF72 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
SHROOM3Q8TF72 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
SHROOM3Q8TF72 AC011551.1-201ENST00000614101 683 ntBASIC23.86■■□□□ 1.41
SHROOM3Q8TF72 PKM-204ENST00000449901 2526 ntTSL 2 BASIC23.86■■□□□ 1.41
SHROOM3Q8TF72 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
SHROOM3Q8TF72 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
SHROOM3Q8TF72 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC23.86■■□□□ 1.41
SHROOM3Q8TF72 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
SHROOM3Q8TF72 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
SHROOM3Q8TF72 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC23.85■■□□□ 1.41
SHROOM3Q8TF72 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC23.85■■□□□ 1.41
SHROOM3Q8TF72 KRT8P33-201ENST00000508125 1423 ntBASIC23.85■■□□□ 1.41
SHROOM3Q8TF72 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC23.85■■□□□ 1.41
SHROOM3Q8TF72 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC23.85■■□□□ 1.41
SHROOM3Q8TF72 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
SHROOM3Q8TF72 AC074183.2-201ENST00000623112 922 ntBASIC23.85■■□□□ 1.41
SHROOM3Q8TF72 AL139125.2-201ENST00000623134 1869 ntBASIC23.85■■□□□ 1.41
SHROOM3Q8TF72 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC23.85■■□□□ 1.41
SHROOM3Q8TF72 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SHROOM3Q8TF72 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
SHROOM3Q8TF72 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC23.84■■□□□ 1.41
SHROOM3Q8TF72 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SHROOM3Q8TF72 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SHROOM3Q8TF72 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC23.84■■□□□ 1.41
SHROOM3Q8TF72 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SHROOM3Q8TF72 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SHROOM3Q8TF72 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
SHROOM3Q8TF72 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
SHROOM3Q8TF72 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC23.84■■□□□ 1.41
SHROOM3Q8TF72 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SHROOM3Q8TF72 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.41
SHROOM3Q8TF72 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SHROOM3Q8TF72 LINC00543-201ENST00000567234 1845 ntBASIC23.83■■□□□ 1.41
SHROOM3Q8TF72 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC23.83■■□□□ 1.41
SHROOM3Q8TF72 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
SHROOM3Q8TF72 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC23.83■■□□□ 1.4
SHROOM3Q8TF72 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC23.83■■□□□ 1.4
SHROOM3Q8TF72 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC23.83■■□□□ 1.4
SHROOM3Q8TF72 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC23.82■■□□□ 1.4
SHROOM3Q8TF72 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC23.82■■□□□ 1.4
SHROOM3Q8TF72 LONRF2P2-201ENST00000439212 571 ntBASIC23.82■■□□□ 1.4
SHROOM3Q8TF72 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
SHROOM3Q8TF72 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
SHROOM3Q8TF72 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
SHROOM3Q8TF72 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SHROOM3Q8TF72 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC23.81■■□□□ 1.4
SHROOM3Q8TF72 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SHROOM3Q8TF72 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SHROOM3Q8TF72 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC23.81■■□□□ 1.4
SHROOM3Q8TF72 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SHROOM3Q8TF72 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
SHROOM3Q8TF72 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC23.81■■□□□ 1.4
SHROOM3Q8TF72 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SHROOM3Q8TF72 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms